Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
FOXN3O00409 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
FOXN3O00409 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXN3O00409 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXN3O00409 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXN3O00409 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
FOXN3O00409 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
FOXN3O00409 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
FOXN3O00409 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.97■□□□□ 0.47
FOXN3O00409 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.97■□□□□ 0.47
FOXN3O00409 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 MRPL20P1-201ENST00000400819 433 ntBASIC17.97■□□□□ 0.47
FOXN3O00409 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 AC116407.3-201ENST00000623905 1129 ntBASIC17.97■□□□□ 0.47
FOXN3O00409 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
FOXN3O00409 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
FOXN3O00409 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 AL031731.1-201ENST00000642131 2094 ntBASIC17.97■□□□□ 0.47
FOXN3O00409 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.97■□□□□ 0.47
FOXN3O00409 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
FOXN3O00409 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
FOXN3O00409 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
FOXN3O00409 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
FOXN3O00409 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.96■□□□□ 0.47
FOXN3O00409 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
FOXN3O00409 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
FOXN3O00409 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXN3O00409 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXN3O00409 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXN3O00409 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC17.96■□□□□ 0.47
FOXN3O00409 AC005412.3-201ENST00000580309 715 ntBASIC17.96■□□□□ 0.47
FOXN3O00409 PRKN-208ENST00000610470 531 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXN3O00409 PRKN-209ENST00000612485 225 ntTSL 5 BASIC17.96■□□□□ 0.47
FOXN3O00409 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC17.96■□□□□ 0.47
FOXN3O00409 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
FOXN3O00409 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
FOXN3O00409 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXN3O00409 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.96■□□□□ 0.47
FOXN3O00409 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
FOXN3O00409 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.96■□□□□ 0.47
FOXN3O00409 GGT3P-204ENST00000453783 1664 ntBASIC17.96■□□□□ 0.47
FOXN3O00409 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.46
FOXN3O00409 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.96■□□□□ 0.46
FOXN3O00409 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
FOXN3O00409 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.95■□□□□ 0.46
FOXN3O00409 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
FOXN3O00409 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXN3O00409 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXN3O00409 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms