Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXA1P49639 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA1P49639 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
HOXA1P49639 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC14.03□□□□□ -0.16
HOXA1P49639 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA1P49639 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 TMED1-207ENST00000591695 809 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA1P49639 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 ADM-208ENST00000534464 1640 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA1P49639 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 AC116353.5-201ENST00000638148 1699 ntBASIC14.03□□□□□ -0.16
HOXA1P49639 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXA1P49639 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
HOXA1P49639 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.03□□□□□ -0.16
HOXA1P49639 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.03□□□□□ -0.16
HOXA1P49639 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXA1P49639 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.16
HOXA1P49639 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
HOXA1P49639 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 RHBDF1P1-201ENST00000427504 1941 ntBASIC14.02□□□□□ -0.16
HOXA1P49639 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC14.02□□□□□ -0.16
HOXA1P49639 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC14.02□□□□□ -0.16
HOXA1P49639 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXA1P49639 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC14.02□□□□□ -0.16
HOXA1P49639 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXA1P49639 AC002558.1-201ENST00000488906 803 ntBASIC14.02□□□□□ -0.17
HOXA1P49639 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC14.02□□□□□ -0.17
HOXA1P49639 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXA1P49639 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXA1P49639 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXA1P49639 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
HOXA1P49639 AL138966.2-201ENST00000621997 464 ntBASIC14.02□□□□□ -0.17
HOXA1P49639 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXA1P49639 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
HOXA1P49639 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 AL365203.3-201ENST00000609742 2057 ntBASIC14.02□□□□□ -0.17
HOXA1P49639 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXA1P49639 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
HOXA1P49639 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms