Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
SOX2P48431 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
SOX2P48431 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX2P48431 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC14.89□□□□□ -0.03
SOX2P48431 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC14.89□□□□□ -0.03
SOX2P48431 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC14.89□□□□□ -0.03
SOX2P48431 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC14.89□□□□□ -0.03
SOX2P48431 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX2P48431 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX2P48431 AC090616.6-201ENST00000582640 721 ntBASIC14.89□□□□□ -0.03
SOX2P48431 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC14.89□□□□□ -0.03
SOX2P48431 AC097493.4-201ENST00000641197 219 ntBASIC14.89□□□□□ -0.03
SOX2P48431 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.89□□□□□ -0.03
SOX2P48431 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX2P48431 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC14.89□□□□□ -0.03
SOX2P48431 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
SOX2P48431 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
SOX2P48431 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
SOX2P48431 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 AC067930.6-201ENST00000623257 4947 ntBASIC14.88□□□□□ -0.03
SOX2P48431 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
SOX2P48431 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 AL671277.2-201ENST00000458060 996 ntBASIC14.88□□□□□ -0.03
SOX2P48431 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC14.88□□□□□ -0.03
SOX2P48431 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 AC073592.5-201ENST00000624854 528 ntBASIC14.88□□□□□ -0.03
SOX2P48431 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 AC011270.2-201ENST00000624293 2550 ntBASIC14.88□□□□□ -0.03
SOX2P48431 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC14.88□□□□□ -0.03
SOX2P48431 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SOX2P48431 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SOX2P48431 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX2P48431 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX2P48431 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX2P48431 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX2P48431 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SOX2P48431 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX2P48431 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX2P48431 AC005052.1-201ENST00000625181 2492 ntBASIC14.87□□□□□ -0.03
SOX2P48431 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
SOX2P48431 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX2P48431 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX2P48431 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX2P48431 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC14.87□□□□□ -0.03
SOX2P48431 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.87□□□□□ -0.03
SOX2P48431 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
SOX2P48431 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
SOX2P48431 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC14.87□□□□□ -0.03
SOX2P48431 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SOX2P48431 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms