Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
COL5A3P25940 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.85■□□□□ 0.93
COL5A3P25940 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC20.85■□□□□ 0.93
COL5A3P25940 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.85■□□□□ 0.93
COL5A3P25940 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.85■□□□□ 0.93
COL5A3P25940 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC20.85■□□□□ 0.93
COL5A3P25940 GALT-202ENST00000450095 1280 ntTSL 2 BASIC20.85■□□□□ 0.93
COL5A3P25940 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC20.85■□□□□ 0.93
COL5A3P25940 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
COL5A3P25940 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
COL5A3P25940 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC20.85■□□□□ 0.93
COL5A3P25940 AC134043.2-201ENST00000624206 2238 ntBASIC20.85■□□□□ 0.93
COL5A3P25940 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.85■□□□□ 0.93
COL5A3P25940 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
COL5A3P25940 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 AL589702.1-201ENST00000641229 1509 ntBASIC20.84■□□□□ 0.93
COL5A3P25940 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC20.84■□□□□ 0.93
COL5A3P25940 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.84■□□□□ 0.93
COL5A3P25940 HIST1H2BPS3-201ENST00000419683 341 ntBASIC20.84■□□□□ 0.93
COL5A3P25940 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC20.84■□□□□ 0.93
COL5A3P25940 PTK7-212ENST00000476760 902 ntTSL 2 BASIC20.84■□□□□ 0.93
COL5A3P25940 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC20.84■□□□□ 0.93
COL5A3P25940 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC20.84■□□□□ 0.93
COL5A3P25940 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.84■□□□□ 0.93
COL5A3P25940 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.84■□□□□ 0.93
COL5A3P25940 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
COL5A3P25940 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC20.84■□□□□ 0.93
COL5A3P25940 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 AC234783.1-201ENST00000441761 496 ntBASIC20.84■□□□□ 0.93
COL5A3P25940 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC20.84■□□□□ 0.93
COL5A3P25940 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 MIR4259-201ENST00000584466 101 ntBASIC20.84■□□□□ 0.93
COL5A3P25940 PCDHB17P-201ENST00000539533 2393 ntBASIC20.84■□□□□ 0.93
COL5A3P25940 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC20.84■□□□□ 0.93
COL5A3P25940 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
COL5A3P25940 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL5A3P25940 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
COL5A3P25940 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL5A3P25940 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
COL5A3P25940 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
COL5A3P25940 AL031731.1-201ENST00000642131 2094 ntBASIC20.83■□□□□ 0.93
COL5A3P25940 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL5A3P25940 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.83■□□□□ 0.93
COL5A3P25940 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
COL5A3P25940 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL5A3P25940 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL5A3P25940 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
COL5A3P25940 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
COL5A3P25940 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.83■□□□□ 0.92
COL5A3P25940 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
COL5A3P25940 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC20.83■□□□□ 0.92
COL5A3P25940 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC20.83■□□□□ 0.92
COL5A3P25940 AC011495.1-201ENST00000498085 584 ntBASIC20.83■□□□□ 0.92
COL5A3P25940 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC20.83■□□□□ 0.92
COL5A3P25940 AC025048.3-201ENST00000590609 569 ntBASIC20.83■□□□□ 0.92
COL5A3P25940 AC093726.1-201ENST00000608064 963 ntBASIC20.83■□□□□ 0.92
COL5A3P25940 AC005702.4-201ENST00000618393 416 ntBASIC20.83■□□□□ 0.92
COL5A3P25940 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC20.83■□□□□ 0.92
COL5A3P25940 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC20.83■□□□□ 0.92
COL5A3P25940 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL5A3P25940 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL5A3P25940 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
COL5A3P25940 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
COL5A3P25940 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL5A3P25940 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL5A3P25940 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
COL5A3P25940 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 GPAA1P2-202ENST00000606848 1787 ntBASIC20.82■□□□□ 0.92
COL5A3P25940 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC20.82■□□□□ 0.92
COL5A3P25940 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC20.82■□□□□ 0.92
COL5A3P25940 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms