Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 KRT8P37-201ENST00000451609 1420 ntBASIC17.23■□□□□ 0.35
COL6A3P12111 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A3P12111 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A3P12111 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.22■□□□□ 0.35
COL6A3P12111 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
COL6A3P12111 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC17.22■□□□□ 0.35
COL6A3P12111 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A3P12111 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.22■□□□□ 0.35
COL6A3P12111 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A3P12111 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A3P12111 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
COL6A3P12111 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A3P12111 RN7SL736P-201ENST00000613111 269 ntBASIC17.22■□□□□ 0.35
COL6A3P12111 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
COL6A3P12111 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
COL6A3P12111 LINC00895-201ENST00000629028 1637 ntBASIC17.22■□□□□ 0.35
COL6A3P12111 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A3P12111 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A3P12111 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A3P12111 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC17.22■□□□□ 0.35
COL6A3P12111 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
COL6A3P12111 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
COL6A3P12111 AC125604.1-201ENST00000496255 707 ntBASIC17.22■□□□□ 0.35
COL6A3P12111 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.22■□□□□ 0.35
COL6A3P12111 AC068025.1-201ENST00000577218 762 ntTSL 3 BASIC17.22■□□□□ 0.35
COL6A3P12111 AC133539.2-201ENST00000604757 467 ntBASIC17.22■□□□□ 0.35
COL6A3P12111 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
COL6A3P12111 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL6A3P12111 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
COL6A3P12111 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 SOCS2P1-201ENST00000417727 557 ntBASIC17.21■□□□□ 0.35
COL6A3P12111 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
COL6A3P12111 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC17.21■□□□□ 0.35
COL6A3P12111 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
COL6A3P12111 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A3P12111 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A3P12111 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
COL6A3P12111 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.21■□□□□ 0.35
COL6A3P12111 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.21■□□□□ 0.35
COL6A3P12111 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
COL6A3P12111 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
COL6A3P12111 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC17.21■□□□□ 0.35
COL6A3P12111 IDS-203ENST00000428056 1213 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A3P12111 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.21■□□□□ 0.35
COL6A3P12111 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC17.21■□□□□ 0.35
COL6A3P12111 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC17.21■□□□□ 0.35
COL6A3P12111 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
COL6A3P12111 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC17.21■□□□□ 0.35
COL6A3P12111 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
COL6A3P12111 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
COL6A3P12111 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 NDUFB11-202ENST00000377811 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC17.2■□□□□ 0.34
COL6A3P12111 MNT-208ENST00000575394 606 ntTSL 4 BASIC17.2■□□□□ 0.34
COL6A3P12111 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC17.2■□□□□ 0.34
COL6A3P12111 AP001527.2-201ENST00000614441 631 ntBASIC17.2■□□□□ 0.34
COL6A3P12111 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.2■□□□□ 0.34
COL6A3P12111 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC17.2■□□□□ 0.34
COL6A3P12111 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.2■□□□□ 0.34
COL6A3P12111 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC17.2■□□□□ 0.34
COL6A3P12111 KRT90P-201ENST00000549264 1064 ntBASIC17.2■□□□□ 0.34
COL6A3P12111 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC17.2■□□□□ 0.34
COL6A3P12111 PLS3-210ENST00000626746 216 ntTSL 4 BASIC17.2■□□□□ 0.34
COL6A3P12111 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.2■□□□□ 0.34
COL6A3P12111 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
COL6A3P12111 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.2■□□□□ 0.34
COL6A3P12111 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC17.2■□□□□ 0.34
COL6A3P12111 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
COL6A3P12111 PTP4A1P2-201ENST00000546033 454 ntBASIC17.2■□□□□ 0.34
COL6A3P12111 FGFR3P5-201ENST00000564496 886 ntBASIC17.2■□□□□ 0.34
COL6A3P12111 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 58.5 ms