Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SDCBPO00560 AP000550.4-202ENST00000639755 178 ntBASIC14.42□□□□□ -0.1
SDCBPO00560 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.42□□□□□ -0.1
SDCBPO00560 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
SDCBPO00560 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDCBPO00560 AC233702.3-201ENST00000578656 1387 ntBASIC14.42□□□□□ -0.1
SDCBPO00560 AL596257.1-201ENST00000641463 2694 ntBASIC14.42□□□□□ -0.1
SDCBPO00560 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDCBPO00560 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
SDCBPO00560 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.42□□□□□ -0.1
SDCBPO00560 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDCBPO00560 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDCBPO00560 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC14.42□□□□□ -0.1
SDCBPO00560 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.42□□□□□ -0.1
SDCBPO00560 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
SDCBPO00560 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.42□□□□□ -0.1
SDCBPO00560 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC14.41□□□□□ -0.1
SDCBPO00560 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
SDCBPO00560 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
SDCBPO00560 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.41□□□□□ -0.1
SDCBPO00560 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.41□□□□□ -0.1
SDCBPO00560 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 TOB2P1-201ENST00000469761 992 ntBASIC14.41□□□□□ -0.1
SDCBPO00560 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC14.41□□□□□ -0.1
SDCBPO00560 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.41□□□□□ -0.1
SDCBPO00560 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC14.41□□□□□ -0.1
SDCBPO00560 AP002414.4-201ENST00000589764 1148 ntBASIC14.41□□□□□ -0.1
SDCBPO00560 IL11-204ENST00000590625 1028 ntTSL 2 BASIC14.41□□□□□ -0.1
SDCBPO00560 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC14.41□□□□□ -0.1
SDCBPO00560 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC14.41□□□□□ -0.1
SDCBPO00560 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.41□□□□□ -0.1
SDCBPO00560 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
SDCBPO00560 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC14.41□□□□□ -0.1
SDCBPO00560 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.4□□□□□ -0.1
SDCBPO00560 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 HLA-A-202ENST00000376806 1854 ntBASIC14.4□□□□□ -0.1
SDCBPO00560 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SDCBPO00560 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.4□□□□□ -0.1
SDCBPO00560 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC14.4□□□□□ -0.1
SDCBPO00560 PPIH-202ENST00000372549 327 ntTSL 3 BASIC14.4□□□□□ -0.1
SDCBPO00560 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 DRAXINP1-201ENST00000437611 948 ntBASIC14.4□□□□□ -0.1
SDCBPO00560 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC14.4□□□□□ -0.1
SDCBPO00560 KRT18P35-201ENST00000510488 1269 ntBASIC14.4□□□□□ -0.1
SDCBPO00560 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC14.4□□□□□ -0.1
SDCBPO00560 TPSP2-201ENST00000561760 610 ntBASIC14.4□□□□□ -0.1
SDCBPO00560 AC069148.1-201ENST00000608741 768 ntBASIC14.4□□□□□ -0.1
SDCBPO00560 AL358472.4-201ENST00000633140 710 ntBASIC14.4□□□□□ -0.1
SDCBPO00560 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SDCBPO00560 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SDCBPO00560 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SDCBPO00560 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
SDCBPO00560 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SDCBPO00560 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC14.4□□□□□ -0.1
SDCBPO00560 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms