Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1FO60840 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1FO60840 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
CACNA1FO60840 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
CACNA1FO60840 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.03■□□□□ 0.96
CACNA1FO60840 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1FO60840 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
CACNA1FO60840 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
CACNA1FO60840 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1FO60840 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC21.03■□□□□ 0.96
CACNA1FO60840 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1FO60840 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CACNA1FO60840 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CACNA1FO60840 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.03■□□□□ 0.96
CACNA1FO60840 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC21.03■□□□□ 0.96
CACNA1FO60840 AL671277.1-201ENST00000429656 993 ntBASIC21.03■□□□□ 0.96
CACNA1FO60840 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC21.03■□□□□ 0.96
CACNA1FO60840 QPRT-203ENST00000562473 579 ntTSL 3 BASIC21.03■□□□□ 0.96
CACNA1FO60840 AC061975.2-201ENST00000581722 295 ntBASIC21.03■□□□□ 0.96
CACNA1FO60840 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC21.03■□□□□ 0.96
CACNA1FO60840 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC21.03■□□□□ 0.96
CACNA1FO60840 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC21.02■□□□□ 0.96
CACNA1FO60840 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 UXT-AS1-201ENST00000590504 1525 ntBASIC21.02■□□□□ 0.96
CACNA1FO60840 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC21.02■□□□□ 0.96
CACNA1FO60840 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CACNA1FO60840 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC21.02■□□□□ 0.96
CACNA1FO60840 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.02■□□□□ 0.96
CACNA1FO60840 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC21.02■□□□□ 0.96
CACNA1FO60840 BANF1P1-201ENST00000553684 263 ntBASIC21.02■□□□□ 0.96
CACNA1FO60840 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.02■□□□□ 0.96
CACNA1FO60840 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC21.02■□□□□ 0.96
CACNA1FO60840 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CACNA1FO60840 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CACNA1FO60840 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CACNA1FO60840 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
CACNA1FO60840 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC21.01■□□□□ 0.95
CACNA1FO60840 MTHFR-217ENST00000641820 1569 ntBASIC21.01■□□□□ 0.95
CACNA1FO60840 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CACNA1FO60840 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1FO60840 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1FO60840 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC21.01■□□□□ 0.95
CACNA1FO60840 LSM12-202ENST00000585388 942 ntTSL 3 BASIC21.01■□□□□ 0.95
CACNA1FO60840 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CACNA1FO60840 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1FO60840 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1FO60840 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.01■□□□□ 0.95
CACNA1FO60840 FLJ38576-201ENST00000623820 2459 ntBASIC21.01■□□□□ 0.95
CACNA1FO60840 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1FO60840 PRORSD1P-202ENST00000563365 2154 ntBASIC21.01■□□□□ 0.95
CACNA1FO60840 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CACNA1FO60840 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1FO60840 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC21.01■□□□□ 0.95
CACNA1FO60840 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CACNA1FO60840 AP3S2-216ENST00000617003 1561 ntBASIC21.01■□□□□ 0.95
CACNA1FO60840 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC21.01■□□□□ 0.95
CACNA1FO60840 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1FO60840 PON3-203ENST00000427422 894 ntTSL 3 BASIC21.01■□□□□ 0.95
CACNA1FO60840 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC21.01■□□□□ 0.95
CACNA1FO60840 ALG1L8P-201ENST00000533887 760 ntBASIC21.01■□□□□ 0.95
CACNA1FO60840 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CACNA1FO60840 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CACNA1FO60840 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC21■□□□□ 0.95
CACNA1FO60840 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC21■□□□□ 0.95
CACNA1FO60840 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC21■□□□□ 0.95
CACNA1FO60840 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC21■□□□□ 0.95
CACNA1FO60840 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 AC069262.1-201ENST00000539058 672 ntBASIC21■□□□□ 0.95
CACNA1FO60840 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21■□□□□ 0.95
CACNA1FO60840 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC21■□□□□ 0.95
CACNA1FO60840 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CACNA1FO60840 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC21■□□□□ 0.95
CACNA1FO60840 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CACNA1FO60840 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
CACNA1FO60840 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
CACNA1FO60840 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 SPDYE14P-201ENST00000442619 822 ntBASIC20.99■□□□□ 0.95
CACNA1FO60840 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 AL138918.1-201ENST00000568306 659 ntBASIC20.99■□□□□ 0.95
CACNA1FO60840 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CACNA1FO60840 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC20.99■□□□□ 0.95
CACNA1FO60840 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms