Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 AP002490.2-201ENST00000524791 560 ntBASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 AC091304.2-201ENST00000564639 760 ntBASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 AC104692.2-201ENST00000603054 253 ntBASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CCM2LQ9NUG4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CCM2LQ9NUG4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.14■□□□□ 0.18
CCM2LQ9NUG4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
CCM2LQ9NUG4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 TSPY19P-201ENST00000418461 509 ntBASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 TSPY18P-201ENST00000441642 509 ntBASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 MTCL1P1-201ENST00000446207 792 ntBASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 AC079781.3-201ENST00000449110 356 ntBASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 IGHV3-52-201ENST00000519770 353 ntBASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 KRT8P26-201ENST00000534154 1276 ntBASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 KRT18P1-202ENST00000452408 1331 ntBASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.14■□□□□ 0.17
CCM2LQ9NUG4 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 AC104640.1-201ENST00000562617 2109 ntBASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 DDT-203ENST00000403754 569 ntTSL 3 BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 DDT-206ENST00000430101 573 ntTSL 2 BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.13■□□□□ 0.17
CCM2LQ9NUG4 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms