Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
USP42Q9H9J4 AC008406.3-201ENST00000620001 1374 ntBASIC30.96■■■□□ 2.55
USP42Q9H9J4 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
USP42Q9H9J4 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.96■■■□□ 2.55
USP42Q9H9J4 LINC01003-201ENST00000564834 1764 ntBASIC30.95■■■□□ 2.55
USP42Q9H9J4 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC30.95■■■□□ 2.54
USP42Q9H9J4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
USP42Q9H9J4 BX255925.1-201ENST00000566954 1854 ntBASIC30.94■■■□□ 2.54
USP42Q9H9J4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
USP42Q9H9J4 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC30.94■■■□□ 2.54
USP42Q9H9J4 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
USP42Q9H9J4 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC30.94■■■□□ 2.54
USP42Q9H9J4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
USP42Q9H9J4 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC30.94■■■□□ 2.54
USP42Q9H9J4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC30.93■■■□□ 2.54
USP42Q9H9J4 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
USP42Q9H9J4 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
USP42Q9H9J4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC30.93■■■□□ 2.54
USP42Q9H9J4 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC30.92■■■□□ 2.54
USP42Q9H9J4 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
USP42Q9H9J4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.54
USP42Q9H9J4 MIR4787-201ENST00000607364 84 ntBASIC30.92■■■□□ 2.54
USP42Q9H9J4 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC30.91■■■□□ 2.54
USP42Q9H9J4 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC30.91■■■□□ 2.54
USP42Q9H9J4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
USP42Q9H9J4 MIR935-201ENST00000401179 91 ntBASIC30.91■■■□□ 2.54
USP42Q9H9J4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
USP42Q9H9J4 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC30.9■■■□□ 2.54
USP42Q9H9J4 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
USP42Q9H9J4 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC30.9■■■□□ 2.54
USP42Q9H9J4 UNC93B8-201ENST00000511903 705 ntBASIC30.9■■■□□ 2.54
USP42Q9H9J4 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC30.9■■■□□ 2.54
USP42Q9H9J4 KRT125P-201ENST00000546827 989 ntBASIC30.9■■■□□ 2.54
USP42Q9H9J4 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
USP42Q9H9J4 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP42Q9H9J4 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP42Q9H9J4 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
USP42Q9H9J4 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.89■■■□□ 2.54
USP42Q9H9J4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP42Q9H9J4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP42Q9H9J4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC30.89■■■□□ 2.54
USP42Q9H9J4 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
USP42Q9H9J4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
USP42Q9H9J4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC30.88■■■□□ 2.53
USP42Q9H9J4 BX664725.1-201ENST00000438252 379 ntBASIC30.88■■■□□ 2.53
USP42Q9H9J4 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC30.87■■■□□ 2.53
USP42Q9H9J4 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
USP42Q9H9J4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC30.87■■■□□ 2.53
USP42Q9H9J4 PEMT-206ENST00000435340 960 ntTSL 5 BASIC30.87■■■□□ 2.53
USP42Q9H9J4 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC30.87■■■□□ 2.53
USP42Q9H9J4 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
USP42Q9H9J4 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
USP42Q9H9J4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC30.86■■■□□ 2.53
USP42Q9H9J4 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC30.86■■■□□ 2.53
USP42Q9H9J4 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC30.85■■■□□ 2.53
USP42Q9H9J4 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC30.85■■■□□ 2.53
USP42Q9H9J4 AC022616.5-201ENST00000518796 181 ntBASIC30.85■■■□□ 2.53
USP42Q9H9J4 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC30.85■■■□□ 2.53
USP42Q9H9J4 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
USP42Q9H9J4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC30.84■■■□□ 2.53
USP42Q9H9J4 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC30.83■■■□□ 2.53
USP42Q9H9J4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
USP42Q9H9J4 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
USP42Q9H9J4 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
USP42Q9H9J4 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
USP42Q9H9J4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC30.82■■■□□ 2.52
USP42Q9H9J4 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
USP42Q9H9J4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC30.81■■■□□ 2.52
USP42Q9H9J4 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
USP42Q9H9J4 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
USP42Q9H9J4 KRT16P3-201ENST00000439127 1283 ntBASIC30.8■■■□□ 2.52
USP42Q9H9J4 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC30.8■■■□□ 2.52
USP42Q9H9J4 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC30.8■■■□□ 2.52
USP42Q9H9J4 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
USP42Q9H9J4 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC30.79■■■□□ 2.52
USP42Q9H9J4 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC30.79■■■□□ 2.52
USP42Q9H9J4 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC30.79■■■□□ 2.52
USP42Q9H9J4 KRT18P24-201ENST00000344739 1156 ntBASIC30.78■■■□□ 2.52
USP42Q9H9J4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
USP42Q9H9J4 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC30.78■■■□□ 2.52
USP42Q9H9J4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC30.78■■■□□ 2.52
USP42Q9H9J4 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.78■■■□□ 2.52
USP42Q9H9J4 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
USP42Q9H9J4 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
USP42Q9H9J4 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.77■■■□□ 2.52
USP42Q9H9J4 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.77■■■□□ 2.52
USP42Q9H9J4 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC30.77■■■□□ 2.52
USP42Q9H9J4 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
USP42Q9H9J4 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.76■■■□□ 2.52
USP42Q9H9J4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC30.76■■■□□ 2.51
USP42Q9H9J4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC30.75■■■□□ 2.51
USP42Q9H9J4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
USP42Q9H9J4 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
USP42Q9H9J4 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
USP42Q9H9J4 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
USP42Q9H9J4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
USP42Q9H9J4 KRT18P10-201ENST00000388836 1287 ntBASIC30.74■■■□□ 2.51
USP42Q9H9J4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC30.74■■■□□ 2.51
USP42Q9H9J4 AC137630.3-201ENST00000607245 391 ntBASIC30.74■■■□□ 2.51
USP42Q9H9J4 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC30.74■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms