Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
TRAIPQ9BWF2 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.39■■□□□ 1.81
TRAIPQ9BWF2 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC26.39■■□□□ 1.81
TRAIPQ9BWF2 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TRAIPQ9BWF2 LONRF2P2-201ENST00000439212 571 ntBASIC26.38■■□□□ 1.81
TRAIPQ9BWF2 SHF-208ENST00000560734 1731 ntTSL 3 BASIC26.38■■□□□ 1.81
TRAIPQ9BWF2 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.38■■□□□ 1.81
TRAIPQ9BWF2 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC26.38■■□□□ 1.81
TRAIPQ9BWF2 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
TRAIPQ9BWF2 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
TRAIPQ9BWF2 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
TRAIPQ9BWF2 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
TRAIPQ9BWF2 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
TRAIPQ9BWF2 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
TRAIPQ9BWF2 TRIR-205ENST00000592273 783 ntTSL 3 BASIC26.37■■□□□ 1.81
TRAIPQ9BWF2 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
TRAIPQ9BWF2 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC26.37■■□□□ 1.81
TRAIPQ9BWF2 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC26.37■■□□□ 1.81
TRAIPQ9BWF2 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC26.36■■□□□ 1.81
TRAIPQ9BWF2 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
TRAIPQ9BWF2 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
TRAIPQ9BWF2 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
TRAIPQ9BWF2 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.36■■□□□ 1.81
TRAIPQ9BWF2 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
TRAIPQ9BWF2 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC26.35■■□□□ 1.81
TRAIPQ9BWF2 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
TRAIPQ9BWF2 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TRAIPQ9BWF2 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
TRAIPQ9BWF2 AC009299.2-201ENST00000482477 511 ntBASIC26.34■■□□□ 1.81
TRAIPQ9BWF2 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC26.34■■□□□ 1.81
TRAIPQ9BWF2 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC26.34■■□□□ 1.81
TRAIPQ9BWF2 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC26.33■■□□□ 1.81
TRAIPQ9BWF2 AC103724.3-201ENST00000564481 992 ntBASIC26.33■■□□□ 1.81
TRAIPQ9BWF2 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRAIPQ9BWF2 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
TRAIPQ9BWF2 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC26.33■■□□□ 1.81
TRAIPQ9BWF2 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
TRAIPQ9BWF2 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
TRAIPQ9BWF2 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
TRAIPQ9BWF2 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC26.32■■□□□ 1.8
TRAIPQ9BWF2 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
TRAIPQ9BWF2 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRAIPQ9BWF2 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
TRAIPQ9BWF2 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
TRAIPQ9BWF2 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
TRAIPQ9BWF2 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC26.3■■□□□ 1.8
TRAIPQ9BWF2 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC26.3■■□□□ 1.8
TRAIPQ9BWF2 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.3■■□□□ 1.8
TRAIPQ9BWF2 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
TRAIPQ9BWF2 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRAIPQ9BWF2 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRAIPQ9BWF2 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
TRAIPQ9BWF2 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
TRAIPQ9BWF2 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRAIPQ9BWF2 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRAIPQ9BWF2 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC26.28■■□□□ 1.8
TRAIPQ9BWF2 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC26.28■■□□□ 1.8
TRAIPQ9BWF2 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC26.28■■□□□ 1.8
TRAIPQ9BWF2 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
TRAIPQ9BWF2 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TRAIPQ9BWF2 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
TRAIPQ9BWF2 AL031848.2-201ENST00000607670 837 ntBASIC26.27■■□□□ 1.8
TRAIPQ9BWF2 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
TRAIPQ9BWF2 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
TRAIPQ9BWF2 AP004609.3-201ENST00000610705 1884 ntBASIC26.27■■□□□ 1.8
TRAIPQ9BWF2 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC26.27■■□□□ 1.8
TRAIPQ9BWF2 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
TRAIPQ9BWF2 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC26.26■■□□□ 1.79
TRAIPQ9BWF2 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
TRAIPQ9BWF2 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
TRAIPQ9BWF2 PRTG-204ENST00000561292 833 ntTSL 3 BASIC26.26■■□□□ 1.79
TRAIPQ9BWF2 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.26■■□□□ 1.79
TRAIPQ9BWF2 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
TRAIPQ9BWF2 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
TRAIPQ9BWF2 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.26■■□□□ 1.79
TRAIPQ9BWF2 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
TRAIPQ9BWF2 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC26.25■■□□□ 1.79
TRAIPQ9BWF2 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC26.25■■□□□ 1.79
TRAIPQ9BWF2 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC26.25■■□□□ 1.79
TRAIPQ9BWF2 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
TRAIPQ9BWF2 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC26.25■■□□□ 1.79
TRAIPQ9BWF2 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
TRAIPQ9BWF2 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
TRAIPQ9BWF2 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
TRAIPQ9BWF2 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
TRAIPQ9BWF2 HES6-204ENST00000409182 863 ntTSL 2 BASIC26.24■■□□□ 1.79
TRAIPQ9BWF2 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC26.24■■□□□ 1.79
TRAIPQ9BWF2 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC26.24■■□□□ 1.79
TRAIPQ9BWF2 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC26.24■■□□□ 1.79
TRAIPQ9BWF2 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC26.23■■□□□ 1.79
TRAIPQ9BWF2 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
TRAIPQ9BWF2 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
TRAIPQ9BWF2 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
TRAIPQ9BWF2 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
TRAIPQ9BWF2 AC022616.5-201ENST00000518796 181 ntBASIC26.23■■□□□ 1.79
TRAIPQ9BWF2 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TRAIPQ9BWF2 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
TRAIPQ9BWF2 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
TRAIPQ9BWF2 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
TRAIPQ9BWF2 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms