Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD1Q96NR3 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD1Q96NR3 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
PTCHD1Q96NR3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC22.65■■□□□ 1.22
PTCHD1Q96NR3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PTCHD1Q96NR3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
PTCHD1Q96NR3 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
PTCHD1Q96NR3 GUK1-208ENST00000366728 842 ntTSL 2 BASIC22.64■■□□□ 1.21
PTCHD1Q96NR3 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PTCHD1Q96NR3 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.64■■□□□ 1.21
PTCHD1Q96NR3 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.64■■□□□ 1.21
PTCHD1Q96NR3 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.64■■□□□ 1.21
PTCHD1Q96NR3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PTCHD1Q96NR3 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.63■■□□□ 1.21
PTCHD1Q96NR3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.63■■□□□ 1.21
PTCHD1Q96NR3 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD1Q96NR3 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD1Q96NR3 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.63■■□□□ 1.21
PTCHD1Q96NR3 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD1Q96NR3 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.63■■□□□ 1.21
PTCHD1Q96NR3 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PTCHD1Q96NR3 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTCHD1Q96NR3 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTCHD1Q96NR3 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.62■■□□□ 1.21
PTCHD1Q96NR3 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.62■■□□□ 1.21
PTCHD1Q96NR3 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
PTCHD1Q96NR3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.62■■□□□ 1.21
PTCHD1Q96NR3 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PTCHD1Q96NR3 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCHD1Q96NR3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
PTCHD1Q96NR3 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
PTCHD1Q96NR3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.61■■□□□ 1.21
PTCHD1Q96NR3 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.6■■□□□ 1.21
PTCHD1Q96NR3 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD1Q96NR3 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD1Q96NR3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
PTCHD1Q96NR3 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
PTCHD1Q96NR3 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PTCHD1Q96NR3 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
PTCHD1Q96NR3 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.58■■□□□ 1.21
PTCHD1Q96NR3 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC22.58■■□□□ 1.21
PTCHD1Q96NR3 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
PTCHD1Q96NR3 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC22.58■■□□□ 1.21
PTCHD1Q96NR3 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.58■■□□□ 1.21
PTCHD1Q96NR3 BHLHE23-202ENST00000612929 1109 ntBASIC22.58■■□□□ 1.21
PTCHD1Q96NR3 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
PTCHD1Q96NR3 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PTCHD1Q96NR3 HYI-210ENST00000486909 905 ntTSL 5 BASIC22.57■■□□□ 1.2
PTCHD1Q96NR3 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC22.57■■□□□ 1.2
PTCHD1Q96NR3 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC22.57■■□□□ 1.2
PTCHD1Q96NR3 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC22.57■■□□□ 1.2
PTCHD1Q96NR3 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC22.57■■□□□ 1.2
PTCHD1Q96NR3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC22.57■■□□□ 1.2
PTCHD1Q96NR3 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
PTCHD1Q96NR3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD1Q96NR3 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD1Q96NR3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD1Q96NR3 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD1Q96NR3 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD1Q96NR3 AC139795.1-202ENST00000500444 432 ntBASIC22.56■■□□□ 1.2
PTCHD1Q96NR3 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.56■■□□□ 1.2
PTCHD1Q96NR3 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC22.56■■□□□ 1.2
PTCHD1Q96NR3 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 KRT18P10-201ENST00000388836 1287 ntBASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
PTCHD1Q96NR3 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD1Q96NR3 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD1Q96NR3 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD1Q96NR3 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
PTCHD1Q96NR3 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC22.54■■□□□ 1.2
PTCHD1Q96NR3 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PTCHD1Q96NR3 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.53■■□□□ 1.2
PTCHD1Q96NR3 ERN1-208ENST00000606895 2068 ntBASIC22.53■■□□□ 1.2
PTCHD1Q96NR3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
PTCHD1Q96NR3 AC092803.2-201ENST00000564287 1899 ntBASIC22.53■■□□□ 1.2
PTCHD1Q96NR3 AC091060.1-201ENST00000623524 1766 ntBASIC22.53■■□□□ 1.2
PTCHD1Q96NR3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC22.52■■□□□ 1.2
PTCHD1Q96NR3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
PTCHD1Q96NR3 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC22.52■■□□□ 1.2
PTCHD1Q96NR3 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC22.52■■□□□ 1.2
PTCHD1Q96NR3 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC22.52■■□□□ 1.2
PTCHD1Q96NR3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
PTCHD1Q96NR3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.52■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms