Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 LSM4-201ENST00000252816 986 ntTSL 2 BASIC24.02■■□□□ 1.44
CFAP54Q96N23 HYI-206ENST00000372434 1025 ntTSL 5 BASIC24.02■■□□□ 1.44
CFAP54Q96N23 PBX2P1-201ENST00000493219 1291 ntBASIC24.02■■□□□ 1.44
CFAP54Q96N23 ABCB10P1-201ENST00000614297 2181 ntBASIC24.02■■□□□ 1.44
CFAP54Q96N23 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC24.02■■□□□ 1.44
CFAP54Q96N23 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC24.01■■□□□ 1.43
CFAP54Q96N23 AC139426.1-201ENST00000568218 2529 ntBASIC24.01■■□□□ 1.43
CFAP54Q96N23 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC24■■□□□ 1.43
CFAP54Q96N23 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC24■■□□□ 1.43
CFAP54Q96N23 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
CFAP54Q96N23 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
CFAP54Q96N23 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CFAP54Q96N23 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
CFAP54Q96N23 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24■■□□□ 1.43
CFAP54Q96N23 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.99■■□□□ 1.43
CFAP54Q96N23 AL355001.2-201ENST00000620617 1191 ntBASIC23.99■■□□□ 1.43
CFAP54Q96N23 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CFAP54Q96N23 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CFAP54Q96N23 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
CFAP54Q96N23 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CFAP54Q96N23 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CFAP54Q96N23 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC23.99■■□□□ 1.43
CFAP54Q96N23 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CFAP54Q96N23 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CFAP54Q96N23 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC23.98■■□□□ 1.43
CFAP54Q96N23 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CFAP54Q96N23 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CFAP54Q96N23 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC23.98■■□□□ 1.43
CFAP54Q96N23 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC23.98■■□□□ 1.43
CFAP54Q96N23 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CFAP54Q96N23 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CFAP54Q96N23 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
CFAP54Q96N23 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.97■■□□□ 1.43
CFAP54Q96N23 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.97■■□□□ 1.43
CFAP54Q96N23 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
CFAP54Q96N23 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CFAP54Q96N23 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.96■■□□□ 1.43
CFAP54Q96N23 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.96■■□□□ 1.43
CFAP54Q96N23 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC23.96■■□□□ 1.43
CFAP54Q96N23 AC105265.2-201ENST00000467189 838 ntBASIC23.95■■□□□ 1.43
CFAP54Q96N23 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.95■■□□□ 1.43
CFAP54Q96N23 MIR6724-1-201ENST00000616420 92 ntBASIC23.95■■□□□ 1.43
CFAP54Q96N23 MIR6724-2-201ENST00000616483 92 ntBASIC23.95■■□□□ 1.43
CFAP54Q96N23 MIR6724-4-201ENST00000617390 92 ntBASIC23.95■■□□□ 1.43
CFAP54Q96N23 MIR6724-3-201ENST00000622482 92 ntBASIC23.95■■□□□ 1.43
CFAP54Q96N23 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC23.95■■□□□ 1.42
CFAP54Q96N23 ID1-201ENST00000376105 1233 ntBASIC23.95■■□□□ 1.42
CFAP54Q96N23 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.95■■□□□ 1.42
CFAP54Q96N23 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CFAP54Q96N23 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.42
CFAP54Q96N23 KRT18P24-201ENST00000344739 1156 ntBASIC23.95■■□□□ 1.42
CFAP54Q96N23 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
CFAP54Q96N23 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.95■■□□□ 1.42
CFAP54Q96N23 RASSF1-AS1-201ENST00000629828 790 ntBASIC23.95■■□□□ 1.42
CFAP54Q96N23 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CFAP54Q96N23 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC23.94■■□□□ 1.42
CFAP54Q96N23 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
CFAP54Q96N23 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.93■■□□□ 1.42
CFAP54Q96N23 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.93■■□□□ 1.42
CFAP54Q96N23 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CFAP54Q96N23 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC23.92■■□□□ 1.42
CFAP54Q96N23 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
CFAP54Q96N23 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.92■■□□□ 1.42
CFAP54Q96N23 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC23.92■■□□□ 1.42
CFAP54Q96N23 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC23.92■■□□□ 1.42
CFAP54Q96N23 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC23.92■■□□□ 1.42
CFAP54Q96N23 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
CFAP54Q96N23 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC23.91■■□□□ 1.42
CFAP54Q96N23 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
CFAP54Q96N23 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
CFAP54Q96N23 ABCB10P3-201ENST00000561950 2166 ntBASIC23.91■■□□□ 1.42
CFAP54Q96N23 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.91■■□□□ 1.42
CFAP54Q96N23 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CFAP54Q96N23 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC23.9■■□□□ 1.42
CFAP54Q96N23 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC23.9■■□□□ 1.42
CFAP54Q96N23 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.9■■□□□ 1.42
CFAP54Q96N23 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.9■■□□□ 1.42
CFAP54Q96N23 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CFAP54Q96N23 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC23.89■■□□□ 1.42
CFAP54Q96N23 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
CFAP54Q96N23 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
CFAP54Q96N23 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
CFAP54Q96N23 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
CFAP54Q96N23 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
CFAP54Q96N23 AC010997.5-201ENST00000609182 354 ntBASIC23.88■■□□□ 1.41
CFAP54Q96N23 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CFAP54Q96N23 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
CFAP54Q96N23 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
CFAP54Q96N23 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.87■■□□□ 1.41
CFAP54Q96N23 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CFAP54Q96N23 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
CFAP54Q96N23 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.87■■□□□ 1.41
CFAP54Q96N23 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC23.87■■□□□ 1.41
CFAP54Q96N23 AL136967.2-201ENST00000623968 743 ntBASIC23.87■■□□□ 1.41
CFAP54Q96N23 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC23.87■■□□□ 1.41
CFAP54Q96N23 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
CFAP54Q96N23 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.86■■□□□ 1.41
CFAP54Q96N23 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC23.86■■□□□ 1.41
CFAP54Q96N23 AL356740.2-201ENST00000601559 647 ntBASIC23.86■■□□□ 1.41
CFAP54Q96N23 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms