Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC7.34□□□□□ -1.24
SYNE1Q8NF91 WHAMMP3-201ENST00000611636 1609 ntBASIC7.34□□□□□ -1.24
SYNE1Q8NF91 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC7.34□□□□□ -1.24
SYNE1Q8NF91 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 CREM-229ENST00000474362 1030 ntTSL 2 BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 RPS2P7-201ENST00000447334 885 ntBASIC7.33□□□□□ -1.24
SYNE1Q8NF91 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 AC087393.1-201ENST00000582896 145 ntBASIC7.33□□□□□ -1.24
SYNE1Q8NF91 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
SYNE1Q8NF91 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 AC019069.1-201ENST00000610008 1333 ntBASIC7.32□□□□□ -1.24
SYNE1Q8NF91 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 TK2-216ENST00000564917 1156 ntTSL 3 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 AL449106.1-201ENST00000608517 1980 ntBASIC7.32□□□□□ -1.24
SYNE1Q8NF91 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 MIR935-201ENST00000401179 91 ntBASIC7.32□□□□□ -1.24
SYNE1Q8NF91 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
SYNE1Q8NF91 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 YBX1P4-201ENST00000392794 808 ntBASIC7.31□□□□□ -1.24
SYNE1Q8NF91 MTX2-204ENST00000443241 799 ntTSL 3 BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 Z92544.1-202ENST00000571933 1220 ntBASIC7.31□□□□□ -1.24
SYNE1Q8NF91 AL031848.2-201ENST00000607670 837 ntBASIC7.31□□□□□ -1.24
SYNE1Q8NF91 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SYNE1Q8NF91 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 RNF146-205ENST00000477776 762 ntTSL 3 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 DRD5P2-201ENST00000421395 2012 ntBASIC7.3□□□□□ -1.24
SYNE1Q8NF91 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SYNE1Q8NF91 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 LONRF2P2-201ENST00000439212 571 ntBASIC7.29□□□□□ -1.24
SYNE1Q8NF91 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC7.29□□□□□ -1.24
SYNE1Q8NF91 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 9.1 ms