Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC29.53■■■□□ 2.32
USP48Q86UV5 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
USP48Q86UV5 LINC01003-201ENST00000564834 1764 ntBASIC29.52■■■□□ 2.32
USP48Q86UV5 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
USP48Q86UV5 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC29.52■■■□□ 2.32
USP48Q86UV5 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
USP48Q86UV5 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC29.52■■■□□ 2.32
USP48Q86UV5 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
USP48Q86UV5 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC29.51■■■□□ 2.32
USP48Q86UV5 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
USP48Q86UV5 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC29.51■■■□□ 2.31
USP48Q86UV5 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC29.51■■■□□ 2.31
USP48Q86UV5 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC29.51■■■□□ 2.31
USP48Q86UV5 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
USP48Q86UV5 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
USP48Q86UV5 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
USP48Q86UV5 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC29.5■■■□□ 2.31
USP48Q86UV5 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
USP48Q86UV5 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
USP48Q86UV5 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
USP48Q86UV5 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC29.5■■■□□ 2.31
USP48Q86UV5 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
USP48Q86UV5 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC29.48■■■□□ 2.31
USP48Q86UV5 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC29.48■■■□□ 2.31
USP48Q86UV5 CREM-229ENST00000474362 1030 ntTSL 2 BASIC29.48■■■□□ 2.31
USP48Q86UV5 GRAMD4P7-201ENST00000578182 1232 ntBASIC29.48■■■□□ 2.31
USP48Q86UV5 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
USP48Q86UV5 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
USP48Q86UV5 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
USP48Q86UV5 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC29.46■■■□□ 2.31
USP48Q86UV5 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
USP48Q86UV5 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
USP48Q86UV5 AC019171.1-201ENST00000601251 1056 ntBASIC29.46■■■□□ 2.31
USP48Q86UV5 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC29.45■■■□□ 2.31
USP48Q86UV5 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC29.45■■■□□ 2.31
USP48Q86UV5 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC29.45■■■□□ 2.31
USP48Q86UV5 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC29.45■■■□□ 2.3
USP48Q86UV5 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC29.45■■■□□ 2.3
USP48Q86UV5 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC29.44■■■□□ 2.3
USP48Q86UV5 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
USP48Q86UV5 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC29.44■■■□□ 2.3
USP48Q86UV5 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
USP48Q86UV5 PEMT-206ENST00000435340 960 ntTSL 5 BASIC29.44■■■□□ 2.3
USP48Q86UV5 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC29.44■■■□□ 2.3
USP48Q86UV5 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC29.44■■■□□ 2.3
USP48Q86UV5 TK2-216ENST00000564917 1156 ntTSL 3 BASIC29.44■■■□□ 2.3
USP48Q86UV5 Z92544.1-202ENST00000571933 1220 ntBASIC29.44■■■□□ 2.3
USP48Q86UV5 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC29.44■■■□□ 2.3
USP48Q86UV5 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
USP48Q86UV5 AL359504.2-201ENST00000605506 1601 ntBASIC29.43■■■□□ 2.3
USP48Q86UV5 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC29.43■■■□□ 2.3
USP48Q86UV5 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
USP48Q86UV5 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
USP48Q86UV5 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
USP48Q86UV5 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC29.42■■■□□ 2.3
USP48Q86UV5 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.42■■■□□ 2.3
USP48Q86UV5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC29.42■■■□□ 2.3
USP48Q86UV5 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC29.42■■■□□ 2.3
USP48Q86UV5 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
USP48Q86UV5 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC29.41■■■□□ 2.3
USP48Q86UV5 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC29.41■■■□□ 2.3
USP48Q86UV5 PKM-203ENST00000389093 2279 ntTSL 5 BASIC29.41■■■□□ 2.3
USP48Q86UV5 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
USP48Q86UV5 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC29.4■■■□□ 2.3
USP48Q86UV5 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
USP48Q86UV5 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC29.4■■■□□ 2.3
USP48Q86UV5 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC29.4■■■□□ 2.3
USP48Q86UV5 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.29
USP48Q86UV5 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
USP48Q86UV5 AC087393.1-201ENST00000582896 145 ntBASIC29.38■■■□□ 2.29
USP48Q86UV5 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC29.38■■■□□ 2.29
USP48Q86UV5 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
USP48Q86UV5 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC29.38■■■□□ 2.29
USP48Q86UV5 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC29.37■■■□□ 2.29
USP48Q86UV5 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
USP48Q86UV5 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC29.37■■■□□ 2.29
USP48Q86UV5 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC29.37■■■□□ 2.29
USP48Q86UV5 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC29.36■■■□□ 2.29
USP48Q86UV5 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
USP48Q86UV5 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
USP48Q86UV5 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
USP48Q86UV5 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
USP48Q86UV5 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC29.36■■■□□ 2.29
USP48Q86UV5 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC29.35■■■□□ 2.29
USP48Q86UV5 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
USP48Q86UV5 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC29.35■■■□□ 2.29
USP48Q86UV5 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC29.35■■■□□ 2.29
USP48Q86UV5 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USP48Q86UV5 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
USP48Q86UV5 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC29.34■■■□□ 2.29
USP48Q86UV5 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC29.34■■■□□ 2.29
USP48Q86UV5 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
USP48Q86UV5 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP48Q86UV5 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP48Q86UV5 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
USP48Q86UV5 AP002414.2-202ENST00000590929 1450 ntBASIC29.33■■■□□ 2.29
USP48Q86UV5 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC29.33■■■□□ 2.29
USP48Q86UV5 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
USP48Q86UV5 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC29.33■■■□□ 2.29
USP48Q86UV5 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms