Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM1Q2M3G4 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
SHROOM1Q2M3G4 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM1Q2M3G4 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM1Q2M3G4 GUSBP5-201ENST00000418136 578 ntBASIC28.43■■■□□ 2.14
SHROOM1Q2M3G4 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
SHROOM1Q2M3G4 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM1Q2M3G4 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC28.42■■■□□ 2.14
SHROOM1Q2M3G4 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM1Q2M3G4 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC28.42■■■□□ 2.14
SHROOM1Q2M3G4 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC28.42■■■□□ 2.14
SHROOM1Q2M3G4 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM1Q2M3G4 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC28.42■■■□□ 2.14
SHROOM1Q2M3G4 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SHROOM1Q2M3G4 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC28.41■■■□□ 2.14
SHROOM1Q2M3G4 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC28.41■■■□□ 2.14
SHROOM1Q2M3G4 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC28.41■■■□□ 2.14
SHROOM1Q2M3G4 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC28.4■■■□□ 2.14
SHROOM1Q2M3G4 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM1Q2M3G4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM1Q2M3G4 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SHROOM1Q2M3G4 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
SHROOM1Q2M3G4 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC28.39■■■□□ 2.14
SHROOM1Q2M3G4 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SHROOM1Q2M3G4 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC28.38■■■□□ 2.13
SHROOM1Q2M3G4 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
SHROOM1Q2M3G4 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
SHROOM1Q2M3G4 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM1Q2M3G4 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM1Q2M3G4 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM1Q2M3G4 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM1Q2M3G4 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SHROOM1Q2M3G4 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM1Q2M3G4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM1Q2M3G4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
SHROOM1Q2M3G4 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC28.34■■■□□ 2.13
SHROOM1Q2M3G4 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC28.34■■■□□ 2.13
SHROOM1Q2M3G4 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM1Q2M3G4 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM1Q2M3G4 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM1Q2M3G4 RNF146-205ENST00000477776 762 ntTSL 3 BASIC28.34■■■□□ 2.13
SHROOM1Q2M3G4 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC28.34■■■□□ 2.13
SHROOM1Q2M3G4 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.34■■■□□ 2.13
SHROOM1Q2M3G4 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
SHROOM1Q2M3G4 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM1Q2M3G4 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SHROOM1Q2M3G4 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC28.33■■■□□ 2.13
SHROOM1Q2M3G4 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC28.32■■■□□ 2.12
SHROOM1Q2M3G4 SHF-208ENST00000560734 1731 ntTSL 3 BASIC28.32■■■□□ 2.12
SHROOM1Q2M3G4 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
SHROOM1Q2M3G4 AC239859.2-201ENST00000444165 318 ntBASIC28.32■■■□□ 2.12
SHROOM1Q2M3G4 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC28.32■■■□□ 2.12
SHROOM1Q2M3G4 THA1P-201ENST00000590384 1145 ntBASIC28.32■■■□□ 2.12
SHROOM1Q2M3G4 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM1Q2M3G4 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
SHROOM1Q2M3G4 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
SHROOM1Q2M3G4 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM1Q2M3G4 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM1Q2M3G4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
SHROOM1Q2M3G4 AL592295.1-201ENST00000400984 884 ntBASIC28.3■■■□□ 2.12
SHROOM1Q2M3G4 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC28.3■■■□□ 2.12
SHROOM1Q2M3G4 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC28.3■■■□□ 2.12
SHROOM1Q2M3G4 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM1Q2M3G4 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SHROOM1Q2M3G4 TK2-216ENST00000564917 1156 ntTSL 3 BASIC28.29■■■□□ 2.12
SHROOM1Q2M3G4 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
SHROOM1Q2M3G4 AC131212.1-201ENST00000613771 668 ntBASIC28.28■■■□□ 2.12
SHROOM1Q2M3G4 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM1Q2M3G4 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
SHROOM1Q2M3G4 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC28.27■■■□□ 2.12
SHROOM1Q2M3G4 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC28.27■■■□□ 2.12
SHROOM1Q2M3G4 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC28.27■■■□□ 2.12
SHROOM1Q2M3G4 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC28.27■■■□□ 2.12
SHROOM1Q2M3G4 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM1Q2M3G4 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM1Q2M3G4 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC28.26■■■□□ 2.11
SHROOM1Q2M3G4 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SHROOM1Q2M3G4 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC28.25■■■□□ 2.11
SHROOM1Q2M3G4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC28.25■■■□□ 2.11
SHROOM1Q2M3G4 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC28.25■■■□□ 2.11
SHROOM1Q2M3G4 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC28.24■■■□□ 2.11
SHROOM1Q2M3G4 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC28.24■■■□□ 2.11
SHROOM1Q2M3G4 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
SHROOM1Q2M3G4 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
SHROOM1Q2M3G4 AL356441.2-201ENST00000443009 864 ntBASIC28.24■■■□□ 2.11
SHROOM1Q2M3G4 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
SHROOM1Q2M3G4 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM1Q2M3G4 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM1Q2M3G4 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM1Q2M3G4 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM1Q2M3G4 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
SHROOM1Q2M3G4 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM1Q2M3G4 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM1Q2M3G4 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC28.23■■■□□ 2.11
SHROOM1Q2M3G4 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
SHROOM1Q2M3G4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC28.22■■■□□ 2.11
SHROOM1Q2M3G4 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM1Q2M3G4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SHROOM1Q2M3G4 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC28.22■■■□□ 2.11
SHROOM1Q2M3G4 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC28.22■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms