Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
PEX3P56589 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
PEX3P56589 TSPY13P-201ENST00000338964 914 ntBASIC26.6■■□□□ 1.85
PEX3P56589 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
PEX3P56589 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC26.59■■□□□ 1.85
PEX3P56589 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.59■■□□□ 1.85
PEX3P56589 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
PEX3P56589 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC26.58■■□□□ 1.85
PEX3P56589 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC26.58■■□□□ 1.85
PEX3P56589 MIR6765-201ENST00000614092 87 ntBASIC26.58■■□□□ 1.85
PEX3P56589 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
PEX3P56589 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
PEX3P56589 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
PEX3P56589 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC26.57■■□□□ 1.84
PEX3P56589 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PEX3P56589 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
PEX3P56589 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
PEX3P56589 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PEX3P56589 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
PEX3P56589 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
PEX3P56589 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC26.56■■□□□ 1.84
PEX3P56589 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PEX3P56589 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PEX3P56589 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
PEX3P56589 AC091060.1-201ENST00000623524 1766 ntBASIC26.56■■□□□ 1.84
PEX3P56589 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC26.55■■□□□ 1.84
PEX3P56589 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.55■■□□□ 1.84
PEX3P56589 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
PEX3P56589 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
PEX3P56589 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC26.55■■□□□ 1.84
PEX3P56589 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
PEX3P56589 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.55■■□□□ 1.84
PEX3P56589 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
PEX3P56589 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PEX3P56589 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PEX3P56589 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PEX3P56589 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PEX3P56589 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
PEX3P56589 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC26.54■■□□□ 1.84
PEX3P56589 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
PEX3P56589 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PEX3P56589 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
PEX3P56589 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
PEX3P56589 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.53■■□□□ 1.84
PEX3P56589 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PEX3P56589 GUK1-208ENST00000366728 842 ntTSL 2 BASIC26.53■■□□□ 1.84
PEX3P56589 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
PEX3P56589 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
PEX3P56589 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC26.53■■□□□ 1.84
PEX3P56589 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PEX3P56589 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC26.52■■□□□ 1.84
PEX3P56589 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.52■■□□□ 1.84
PEX3P56589 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
PEX3P56589 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.84
PEX3P56589 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
PEX3P56589 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PEX3P56589 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC26.51■■□□□ 1.83
PEX3P56589 AC010501.1-201ENST00000606270 1962 ntBASIC26.51■■□□□ 1.83
PEX3P56589 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC26.51■■□□□ 1.83
PEX3P56589 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PEX3P56589 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.5■■□□□ 1.83
PEX3P56589 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.5■■□□□ 1.83
PEX3P56589 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.5■■□□□ 1.83
PEX3P56589 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC26.5■■□□□ 1.83
PEX3P56589 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
PEX3P56589 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PEX3P56589 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
PEX3P56589 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.49■■□□□ 1.83
PEX3P56589 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.49■■□□□ 1.83
PEX3P56589 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.49■■□□□ 1.83
PEX3P56589 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
PEX3P56589 AC096887.2-201ENST00000623443 1957 ntBASIC26.49■■□□□ 1.83
PEX3P56589 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC26.48■■□□□ 1.83
PEX3P56589 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PEX3P56589 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.48■■□□□ 1.83
PEX3P56589 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PEX3P56589 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
PEX3P56589 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC26.48■■□□□ 1.83
PEX3P56589 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
PEX3P56589 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
PEX3P56589 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC26.47■■□□□ 1.83
PEX3P56589 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
PEX3P56589 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC26.46■■□□□ 1.83
PEX3P56589 AC145676.1-201ENST00000514988 2004 ntBASIC26.45■■□□□ 1.82
PEX3P56589 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.45■■□□□ 1.82
PEX3P56589 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC26.45■■□□□ 1.82
PEX3P56589 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
PEX3P56589 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
PEX3P56589 DUSP8P4-201ENST00000399538 1761 ntBASIC26.44■■□□□ 1.82
PEX3P56589 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC26.44■■□□□ 1.82
PEX3P56589 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
PEX3P56589 RPS2P7-201ENST00000447334 885 ntBASIC26.44■■□□□ 1.82
PEX3P56589 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
PEX3P56589 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.44■■□□□ 1.82
PEX3P56589 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC26.44■■□□□ 1.82
PEX3P56589 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.43■■□□□ 1.82
PEX3P56589 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
PEX3P56589 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC26.43■■□□□ 1.82
PEX3P56589 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.43■■□□□ 1.82
PEX3P56589 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC26.43■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms