Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SNCAP37840 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SNCAP37840 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNCAP37840 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SNCAP37840 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SNCAP37840 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SNCAP37840 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC19.57■□□□□ 0.72
SNCAP37840 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.56■□□□□ 0.72
SNCAP37840 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SNCAP37840 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC19.56■□□□□ 0.72
SNCAP37840 RPS2-210ENST00000530225 765 ntTSL 2 BASIC19.56■□□□□ 0.72
SNCAP37840 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SNCAP37840 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SNCAP37840 CLDN5-201ENST00000403084 2357 ntBASIC19.55■□□□□ 0.72
SNCAP37840 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
SNCAP37840 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SNCAP37840 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SNCAP37840 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SNCAP37840 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SNCAP37840 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC19.54■□□□□ 0.72
SNCAP37840 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SNCAP37840 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SNCAP37840 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SNCAP37840 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.54■□□□□ 0.72
SNCAP37840 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SNCAP37840 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SNCAP37840 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.53■□□□□ 0.72
SNCAP37840 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SNCAP37840 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SNCAP37840 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SNCAP37840 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SNCAP37840 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SNCAP37840 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
SNCAP37840 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC19.52■□□□□ 0.72
SNCAP37840 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.52■□□□□ 0.72
SNCAP37840 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC19.52■□□□□ 0.71
SNCAP37840 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SNCAP37840 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
SNCAP37840 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC19.51■□□□□ 0.71
SNCAP37840 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC19.51■□□□□ 0.71
SNCAP37840 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SNCAP37840 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
SNCAP37840 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SNCAP37840 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.51■□□□□ 0.71
SNCAP37840 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.5■□□□□ 0.71
SNCAP37840 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNCAP37840 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SNCAP37840 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNCAP37840 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SNCAP37840 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNCAP37840 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNCAP37840 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SNCAP37840 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNCAP37840 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNCAP37840 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNCAP37840 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNCAP37840 CHML-204ENST00000638121 920 ntTSL 2 BASIC19.49■□□□□ 0.71
SNCAP37840 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SNCAP37840 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SNCAP37840 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SNCAP37840 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.49■□□□□ 0.71
SNCAP37840 AC138932.3-201ENST00000567634 1902 ntBASIC19.49■□□□□ 0.71
SNCAP37840 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SNCAP37840 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNCAP37840 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SNCAP37840 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SNCAP37840 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SNCAP37840 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.48■□□□□ 0.71
SNCAP37840 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
SNCAP37840 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SNCAP37840 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SNCAP37840 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNCAP37840 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SNCAP37840 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SNCAP37840 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC19.47■□□□□ 0.71
SNCAP37840 LINC01971-201ENST00000617888 1048 ntBASIC19.47■□□□□ 0.71
SNCAP37840 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.47■□□□□ 0.71
SNCAP37840 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC19.47■□□□□ 0.71
SNCAP37840 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SNCAP37840 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.47■□□□□ 0.71
SNCAP37840 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.47■□□□□ 0.71
SNCAP37840 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNCAP37840 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.46■□□□□ 0.71
SNCAP37840 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNCAP37840 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
SNCAP37840 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.46■□□□□ 0.71
SNCAP37840 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.46■□□□□ 0.71
SNCAP37840 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SNCAP37840 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.46■□□□□ 0.71
SNCAP37840 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNCAP37840 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SNCAP37840 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SNCAP37840 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNCAP37840 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNCAP37840 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SNCAP37840 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNCAP37840 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SNCAP37840 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.45■□□□□ 0.7
SNCAP37840 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SNCAP37840 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms