Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AC139795.1-202ENST00000500444 432 ntBASIC25.85■■□□□ 1.73
SCN1AP35498 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC25.85■■□□□ 1.73
SCN1AP35498 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC25.85■■□□□ 1.73
SCN1AP35498 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
SCN1AP35498 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
SCN1AP35498 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SCN1AP35498 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.85■■□□□ 1.73
SCN1AP35498 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SCN1AP35498 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
SCN1AP35498 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC25.85■■□□□ 1.73
SCN1AP35498 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
SCN1AP35498 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.84■■□□□ 1.73
SCN1AP35498 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
SCN1AP35498 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC25.84■■□□□ 1.73
SCN1AP35498 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC25.84■■□□□ 1.73
SCN1AP35498 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
SCN1AP35498 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC25.83■■□□□ 1.73
SCN1AP35498 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
SCN1AP35498 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.83■■□□□ 1.72
SCN1AP35498 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC25.82■■□□□ 1.72
SCN1AP35498 RARRES2P1-201ENST00000474487 481 ntBASIC25.82■■□□□ 1.72
SCN1AP35498 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC25.82■■□□□ 1.72
SCN1AP35498 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC25.82■■□□□ 1.72
SCN1AP35498 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
SCN1AP35498 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC25.81■■□□□ 1.72
SCN1AP35498 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
SCN1AP35498 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
SCN1AP35498 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC25.81■■□□□ 1.72
SCN1AP35498 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SCN1AP35498 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC25.81■■□□□ 1.72
SCN1AP35498 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
SCN1AP35498 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SCN1AP35498 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC25.81■■□□□ 1.72
SCN1AP35498 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
SCN1AP35498 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.8■■□□□ 1.72
SCN1AP35498 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
SCN1AP35498 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
SCN1AP35498 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC25.8■■□□□ 1.72
SCN1AP35498 AC087393.1-201ENST00000582896 145 ntBASIC25.8■■□□□ 1.72
SCN1AP35498 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
SCN1AP35498 AC096887.2-201ENST00000623443 1957 ntBASIC25.8■■□□□ 1.72
SCN1AP35498 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.8■■□□□ 1.72
SCN1AP35498 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
SCN1AP35498 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC25.79■■□□□ 1.72
SCN1AP35498 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
SCN1AP35498 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
SCN1AP35498 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
SCN1AP35498 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SCN1AP35498 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SCN1AP35498 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
SCN1AP35498 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC25.78■■□□□ 1.72
SCN1AP35498 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC25.78■■□□□ 1.72
SCN1AP35498 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SCN1AP35498 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SCN1AP35498 RPS2P7-201ENST00000447334 885 ntBASIC25.78■■□□□ 1.72
SCN1AP35498 AC010980.1-201ENST00000587192 1142 ntBASIC25.78■■□□□ 1.72
SCN1AP35498 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC25.78■■□□□ 1.72
SCN1AP35498 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
SCN1AP35498 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.77■■□□□ 1.72
SCN1AP35498 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
SCN1AP35498 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.72
SCN1AP35498 MIR4508-201ENST00000584178 70 ntBASIC25.76■■□□□ 1.72
SCN1AP35498 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
SCN1AP35498 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
SCN1AP35498 AC018755.3-202ENST00000596210 929 ntBASIC25.76■■□□□ 1.71
SCN1AP35498 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.76■■□□□ 1.71
SCN1AP35498 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC25.75■■□□□ 1.71
SCN1AP35498 AC092803.2-201ENST00000564287 1899 ntBASIC25.75■■□□□ 1.71
SCN1AP35498 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SCN1AP35498 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
SCN1AP35498 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.75■■□□□ 1.71
SCN1AP35498 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.75■■□□□ 1.71
SCN1AP35498 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
SCN1AP35498 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
SCN1AP35498 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC25.74■■□□□ 1.71
SCN1AP35498 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SCN1AP35498 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
SCN1AP35498 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SCN1AP35498 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC25.73■■□□□ 1.71
SCN1AP35498 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SCN1AP35498 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.73■■□□□ 1.71
SCN1AP35498 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SCN1AP35498 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC25.73■■□□□ 1.71
SCN1AP35498 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC25.73■■□□□ 1.71
SCN1AP35498 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC25.73■■□□□ 1.71
SCN1AP35498 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC25.72■■□□□ 1.71
SCN1AP35498 AC103724.3-201ENST00000564481 992 ntBASIC25.72■■□□□ 1.71
SCN1AP35498 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SCN1AP35498 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC25.72■■□□□ 1.71
SCN1AP35498 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.72■■□□□ 1.71
SCN1AP35498 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC25.71■■□□□ 1.71
SCN1AP35498 IDNK-201ENST00000376417 511 ntTSL 5 BASIC25.71■■□□□ 1.71
SCN1AP35498 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SCN1AP35498 MTX2-204ENST00000443241 799 ntTSL 3 BASIC25.71■■□□□ 1.71
SCN1AP35498 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC25.71■■□□□ 1.71
SCN1AP35498 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC25.71■■□□□ 1.71
SCN1AP35498 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
SCN1AP35498 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC25.71■■□□□ 1.71
SCN1AP35498 AC010501.1-201ENST00000606270 1962 ntBASIC25.71■■□□□ 1.71
SCN1AP35498 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms