Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC26.34■■□□□ 1.81
CLDN3O15551 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
CLDN3O15551 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
CLDN3O15551 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC26.33■■□□□ 1.81
CLDN3O15551 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC26.32■■□□□ 1.8
CLDN3O15551 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CLDN3O15551 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CLDN3O15551 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.32■■□□□ 1.8
CLDN3O15551 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
CLDN3O15551 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
CLDN3O15551 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
CLDN3O15551 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
CLDN3O15551 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CLDN3O15551 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC26.31■■□□□ 1.8
CLDN3O15551 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CLDN3O15551 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CLDN3O15551 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CLDN3O15551 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
CLDN3O15551 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CLDN3O15551 IDNK-203ENST00000405990 629 ntTSL 2 BASIC26.3■■□□□ 1.8
CLDN3O15551 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CLDN3O15551 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CLDN3O15551 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLDN3O15551 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.29■■□□□ 1.8
CLDN3O15551 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLDN3O15551 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLDN3O15551 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLDN3O15551 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC26.29■■□□□ 1.8
CLDN3O15551 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC26.28■■□□□ 1.8
CLDN3O15551 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLDN3O15551 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLDN3O15551 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLDN3O15551 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC26.28■■□□□ 1.8
CLDN3O15551 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC26.27■■□□□ 1.8
CLDN3O15551 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CLDN3O15551 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC26.27■■□□□ 1.8
CLDN3O15551 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLDN3O15551 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLDN3O15551 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLDN3O15551 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CLDN3O15551 KRT18P10-201ENST00000388836 1287 ntBASIC26.26■■□□□ 1.79
CLDN3O15551 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC26.26■■□□□ 1.79
CLDN3O15551 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC26.26■■□□□ 1.79
CLDN3O15551 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLDN3O15551 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC26.25■■□□□ 1.79
CLDN3O15551 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLDN3O15551 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CLDN3O15551 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC26.25■■□□□ 1.79
CLDN3O15551 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC26.25■■□□□ 1.79
CLDN3O15551 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC26.25■■□□□ 1.79
CLDN3O15551 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC26.25■■□□□ 1.79
CLDN3O15551 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CLDN3O15551 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
CLDN3O15551 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC26.24■■□□□ 1.79
CLDN3O15551 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC26.24■■□□□ 1.79
CLDN3O15551 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CLDN3O15551 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.24■■□□□ 1.79
CLDN3O15551 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CLDN3O15551 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
CLDN3O15551 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
CLDN3O15551 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN3O15551 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN3O15551 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN3O15551 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN3O15551 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.23■■□□□ 1.79
CLDN3O15551 BHLHE23-202ENST00000612929 1109 ntBASIC26.23■■□□□ 1.79
CLDN3O15551 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN3O15551 AC092803.2-201ENST00000564287 1899 ntBASIC26.23■■□□□ 1.79
CLDN3O15551 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN3O15551 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN3O15551 SHF-207ENST00000560540 2062 ntTSL 5 BASIC26.23■■□□□ 1.79
CLDN3O15551 ERN1-208ENST00000606895 2068 ntBASIC26.23■■□□□ 1.79
CLDN3O15551 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.22■■□□□ 1.79
CLDN3O15551 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC26.22■■□□□ 1.79
CLDN3O15551 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.22■■□□□ 1.79
CLDN3O15551 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
CLDN3O15551 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
CLDN3O15551 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
CLDN3O15551 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC26.21■■□□□ 1.79
CLDN3O15551 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC26.21■■□□□ 1.79
CLDN3O15551 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CLDN3O15551 AC139795.1-202ENST00000500444 432 ntBASIC26.21■■□□□ 1.79
CLDN3O15551 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC26.21■■□□□ 1.79
CLDN3O15551 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
CLDN3O15551 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC26.21■■□□□ 1.79
CLDN3O15551 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CLDN3O15551 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC26.2■■□□□ 1.78
CLDN3O15551 RPS2P7-201ENST00000447334 885 ntBASIC26.2■■□□□ 1.78
CLDN3O15551 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC26.2■■□□□ 1.78
CLDN3O15551 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
CLDN3O15551 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
CLDN3O15551 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CLDN3O15551 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CLDN3O15551 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
CLDN3O15551 AC087393.1-201ENST00000582896 145 ntBASIC26.19■■□□□ 1.78
CLDN3O15551 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC26.19■■□□□ 1.78
CLDN3O15551 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
CLDN3O15551 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC26.19■■□□□ 1.78
CLDN3O15551 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC26.18■■□□□ 1.78
CLDN3O15551 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms