Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAV3A0A0B4J244 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV3A0A0B4J244 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV3A0A0B4J244 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV3A0A0B4J244 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV3A0A0B4J244 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV3A0A0B4J244 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV3A0A0B4J244 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV3A0A0B4J244 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAV3A0A0B4J244 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAV3A0A0B4J244 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV3A0A0B4J244 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV3A0A0B4J244 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV3A0A0B4J244 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV3A0A0B4J244 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.31■□□□□ 0.68
TRAV3A0A0B4J244 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.31■□□□□ 0.68
TRAV3A0A0B4J244 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.31■□□□□ 0.68
TRAV3A0A0B4J244 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
TRAV3A0A0B4J244 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
TRAV3A0A0B4J244 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV3A0A0B4J244 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
TRAV3A0A0B4J244 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV3A0A0B4J244 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.29■□□□□ 0.68
TRAV3A0A0B4J244 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV3A0A0B4J244 ZSCAN18-202ENST00000421612 1488 ntTSL 4 BASIC19.28■□□□□ 0.68
TRAV3A0A0B4J244 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV3A0A0B4J244 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV3A0A0B4J244 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV3A0A0B4J244 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV3A0A0B4J244 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.28■□□□□ 0.68
TRAV3A0A0B4J244 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV3A0A0B4J244 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV3A0A0B4J244 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV3A0A0B4J244 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TRAV3A0A0B4J244 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
TRAV3A0A0B4J244 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV3A0A0B4J244 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV3A0A0B4J244 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRAV3A0A0B4J244 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV3A0A0B4J244 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAV3A0A0B4J244 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC19.26■□□□□ 0.67
TRAV3A0A0B4J244 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV3A0A0B4J244 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC19.26■□□□□ 0.67
TRAV3A0A0B4J244 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC19.26■□□□□ 0.67
TRAV3A0A0B4J244 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
TRAV3A0A0B4J244 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 AL139125.2-201ENST00000623134 1869 ntBASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV3A0A0B4J244 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV3A0A0B4J244 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV3A0A0B4J244 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV3A0A0B4J244 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV3A0A0B4J244 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV3A0A0B4J244 AL157400.5-201ENST00000507624 621 ntBASIC19.24■□□□□ 0.67
TRAV3A0A0B4J244 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV3A0A0B4J244 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV3A0A0B4J244 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV3A0A0B4J244 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV3A0A0B4J244 MIR7108-201ENST00000614319 87 ntBASIC19.22■□□□□ 0.67
TRAV3A0A0B4J244 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.22■□□□□ 0.67
TRAV3A0A0B4J244 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV3A0A0B4J244 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
TRAV3A0A0B4J244 AC097639.1-201ENST00000565519 1891 ntBASIC19.22■□□□□ 0.67
TRAV3A0A0B4J244 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV3A0A0B4J244 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV3A0A0B4J244 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
TRAV3A0A0B4J244 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV3A0A0B4J244 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV3A0A0B4J244 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV3A0A0B4J244 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV3A0A0B4J244 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms