Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 TSPY22P-201ENST00000427496 604 ntBASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 AC116407.4-201ENST00000623319 1061 ntBASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 AC092053.1-201ENST00000605787 1936 ntBASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
PPP4R4Q6NUP7 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 AL121672.3-201ENST00000608644 468 ntBASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
PPP4R4Q6NUP7 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 RNF126P1-202ENST00000569893 925 ntBASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 AC005332.3-201ENST00000589904 676 ntBASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
PPP4R4Q6NUP7 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PPP4R4Q6NUP7 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.33■□□□□ 0.21
PPP4R4Q6NUP7 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PPP4R4Q6NUP7 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms