Protein–RNA interactions for Protein: P55771

PAX9, Paired box protein Pax-9, humanhuman

Predictions only

Length 341 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAX9P55771 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
PAX9P55771 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 AL353593.2-201ENST00000602529 1483 ntBASIC13.67□□□□□ -0.22
PAX9P55771 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC13.67□□□□□ -0.22
PAX9P55771 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 PC-204ENST00000524491 1714 ntTSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.67□□□□□ -0.22
PAX9P55771 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
PAX9P55771 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 STARP1-201ENST00000397973 869 ntBASIC13.67□□□□□ -0.22
PAX9P55771 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC13.67□□□□□ -0.22
PAX9P55771 AC145285.6-201ENST00000604632 637 ntBASIC13.67□□□□□ -0.22
PAX9P55771 AL390719.2-201ENST00000606993 987 ntBASIC13.67□□□□□ -0.22
PAX9P55771 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 HLA-DQB2-231ENST00000435145 2026 ntBASIC13.67□□□□□ -0.22
PAX9P55771 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 LINC00895-201ENST00000629028 1637 ntBASIC13.67□□□□□ -0.22
PAX9P55771 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.67□□□□□ -0.22
PAX9P55771 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.67□□□□□ -0.22
PAX9P55771 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
PAX9P55771 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
PAX9P55771 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.66□□□□□ -0.22
PAX9P55771 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
PAX9P55771 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
PAX9P55771 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC13.66□□□□□ -0.22
PAX9P55771 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 GXYLT1P3-201ENST00000453058 1193 ntBASIC13.66□□□□□ -0.22
PAX9P55771 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC13.66□□□□□ -0.22
PAX9P55771 STK19B-204ENST00000512515 211 ntBASIC13.66□□□□□ -0.22
PAX9P55771 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC13.66□□□□□ -0.22
PAX9P55771 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC13.66□□□□□ -0.22
PAX9P55771 SPEG-225ENST00000617028 815 ntTSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
PAX9P55771 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.66□□□□□ -0.22
PAX9P55771 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC13.66□□□□□ -0.22
PAX9P55771 AC144831.1-201ENST00000573312 2656 ntBASIC13.66□□□□□ -0.22
PAX9P55771 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms