Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.14■□□□□ 0.33
PTPN4P29074 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PTPN4P29074 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
PTPN4P29074 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.13■□□□□ 0.33
PTPN4P29074 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN4P29074 AC078925.2-201ENST00000624013 1973 ntBASIC17.13■□□□□ 0.33
PTPN4P29074 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PTPN4P29074 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.13■□□□□ 0.33
PTPN4P29074 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN4P29074 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 AC092171.3-201ENST00000610122 2651 ntBASIC17.13■□□□□ 0.33
PTPN4P29074 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.13■□□□□ 0.33
PTPN4P29074 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.13■□□□□ 0.33
PTPN4P29074 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PTPN4P29074 AP002469.2-201ENST00000531724 424 ntBASIC17.13■□□□□ 0.33
PTPN4P29074 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC17.13■□□□□ 0.33
PTPN4P29074 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.13■□□□□ 0.33
PTPN4P29074 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.13■□□□□ 0.33
PTPN4P29074 GXYLT1P4-201ENST00000613576 1192 ntBASIC17.13■□□□□ 0.33
PTPN4P29074 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC17.13■□□□□ 0.33
PTPN4P29074 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
PTPN4P29074 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
PTPN4P29074 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
PTPN4P29074 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PTPN4P29074 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.12■□□□□ 0.33
PTPN4P29074 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.12■□□□□ 0.33
PTPN4P29074 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 AC009949.1-201ENST00000623048 1830 ntBASIC17.12■□□□□ 0.33
PTPN4P29074 AC046185.3-201ENST00000623228 1824 ntBASIC17.12■□□□□ 0.33
PTPN4P29074 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
PTPN4P29074 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.12■□□□□ 0.33
PTPN4P29074 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.12■□□□□ 0.33
PTPN4P29074 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.12■□□□□ 0.33
PTPN4P29074 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
PTPN4P29074 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.12■□□□□ 0.33
PTPN4P29074 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
PTPN4P29074 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 NUS1P2-201ENST00000417358 873 ntBASIC17.12■□□□□ 0.33
PTPN4P29074 POM121L3P-201ENST00000419331 1163 ntBASIC17.12■□□□□ 0.33
PTPN4P29074 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 AC091607.1-201ENST00000490318 1060 ntBASIC17.12■□□□□ 0.33
PTPN4P29074 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC17.12■□□□□ 0.33
PTPN4P29074 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.12■□□□□ 0.33
PTPN4P29074 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PTPN4P29074 AL662844.1-201ENST00000546340 181 ntBASIC17.12■□□□□ 0.33
PTPN4P29074 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PTPN4P29074 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.12■□□□□ 0.33
PTPN4P29074 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17.12■□□□□ 0.33
PTPN4P29074 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
PTPN4P29074 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.12■□□□□ 0.33
PTPN4P29074 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PTPN4P29074 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PTPN4P29074 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms