Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
TDP1Q9NUW8 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 GNAS-203ENST00000306120 1878 ntBASIC17.46■□□□□ 0.39
TDP1Q9NUW8 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 PMS2P4-201ENST00000412466 1052 ntBASIC17.46■□□□□ 0.39
TDP1Q9NUW8 KRT8P23-201ENST00000560090 1207 ntBASIC17.46■□□□□ 0.39
TDP1Q9NUW8 SPCS2P1-201ENST00000561636 679 ntBASIC17.46■□□□□ 0.39
TDP1Q9NUW8 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 AL031055.1-201ENST00000606362 631 ntBASIC17.46■□□□□ 0.39
TDP1Q9NUW8 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 AC131009.4-201ENST00000624048 1740 ntBASIC17.46■□□□□ 0.39
TDP1Q9NUW8 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
TDP1Q9NUW8 WASH6P-202ENST00000359512 1437 ntBASIC17.46■□□□□ 0.39
TDP1Q9NUW8 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.46■□□□□ 0.38
TDP1Q9NUW8 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
TDP1Q9NUW8 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 AL021920.2-201ENST00000624828 1351 ntBASIC17.45■□□□□ 0.38
TDP1Q9NUW8 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 RPL30-202ENST00000396070 440 ntTSL 2 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 AL512356.2-201ENST00000546955 174 ntBASIC17.45■□□□□ 0.38
TDP1Q9NUW8 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 LINC01225-203ENST00000563550 1244 ntBASIC17.45■□□□□ 0.38
TDP1Q9NUW8 MIR3909-201ENST00000579518 119 ntBASIC17.45■□□□□ 0.38
TDP1Q9NUW8 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.45■□□□□ 0.38
TDP1Q9NUW8 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 FRMD8P1-201ENST00000440433 1524 ntBASIC17.44■□□□□ 0.38
TDP1Q9NUW8 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 CNN2P2-201ENST00000443536 909 ntBASIC17.44■□□□□ 0.38
TDP1Q9NUW8 CNN2P3-201ENST00000450201 906 ntBASIC17.44■□□□□ 0.38
TDP1Q9NUW8 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 MPDU1-223ENST00000582151 728 ntBASIC17.44■□□□□ 0.38
TDP1Q9NUW8 AL096865.1-201ENST00000606796 927 ntBASIC17.44■□□□□ 0.38
TDP1Q9NUW8 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 AL136317.3-201ENST00000618497 906 ntBASIC17.44■□□□□ 0.38
TDP1Q9NUW8 AP001059.3-201ENST00000619053 235 ntBASIC17.44■□□□□ 0.38
TDP1Q9NUW8 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TDP1Q9NUW8 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms