Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC14.02□□□□□ -0.17
CDX1P47902 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
CDX1P47902 KRT17P6-201ENST00000453795 1220 ntBASIC14.02□□□□□ -0.17
CDX1P47902 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
CDX1P47902 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC14.02□□□□□ -0.17
CDX1P47902 ABR-204ENST00000543210 1049 ntTSL 2 BASIC14.02□□□□□ -0.17
CDX1P47902 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.02□□□□□ -0.17
CDX1P47902 AC074051.2-201ENST00000565115 352 ntBASIC14.02□□□□□ -0.17
CDX1P47902 ABR-217ENST00000572441 563 ntTSL 4 BASIC14.02□□□□□ -0.17
CDX1P47902 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC14.02□□□□□ -0.17
CDX1P47902 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
CDX1P47902 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 AL121772.3-201ENST00000610840 674 ntBASIC14.02□□□□□ -0.17
CDX1P47902 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CDX1P47902 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
CDX1P47902 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.02□□□□□ -0.17
CDX1P47902 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
CDX1P47902 AC093677.2-201ENST00000600169 1863 ntBASIC14.01□□□□□ -0.17
CDX1P47902 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC14.01□□□□□ -0.17
CDX1P47902 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
CDX1P47902 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC14.01□□□□□ -0.17
CDX1P47902 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.01□□□□□ -0.17
CDX1P47902 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CDX1P47902 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC14.01□□□□□ -0.17
CDX1P47902 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
CDX1P47902 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC14.01□□□□□ -0.17
CDX1P47902 KRT18P65-201ENST00000439811 1286 ntBASIC14.01□□□□□ -0.17
CDX1P47902 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.01□□□□□ -0.17
CDX1P47902 SKP2-204ENST00000508514 821 ntTSL 3 BASIC14.01□□□□□ -0.17
CDX1P47902 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC14.01□□□□□ -0.17
CDX1P47902 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC14.01□□□□□ -0.17
CDX1P47902 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.01□□□□□ -0.17
CDX1P47902 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.01□□□□□ -0.17
CDX1P47902 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
CDX1P47902 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.01□□□□□ -0.17
CDX1P47902 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC14.01□□□□□ -0.17
CDX1P47902 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
CDX1P47902 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC14□□□□□ -0.17
CDX1P47902 FLJ13224-201ENST00000313737 1514 ntBASIC14□□□□□ -0.17
CDX1P47902 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14□□□□□ -0.17
CDX1P47902 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14□□□□□ -0.17
CDX1P47902 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC14□□□□□ -0.17
CDX1P47902 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC14□□□□□ -0.17
CDX1P47902 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CDX1P47902 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
CDX1P47902 TPM4P1-201ENST00000436100 807 ntBASIC14□□□□□ -0.17
CDX1P47902 AC068472.1-201ENST00000474589 881 ntBASIC14□□□□□ -0.17
CDX1P47902 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14□□□□□ -0.17
CDX1P47902 LINC01711-201ENST00000598340 967 ntBASIC14□□□□□ -0.17
CDX1P47902 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC14□□□□□ -0.17
CDX1P47902 AC024909.3-201ENST00000611513 2257 ntBASIC14□□□□□ -0.17
CDX1P47902 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
CDX1P47902 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms