Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
HPS3Q969F9 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19■□□□□ 0.63
HPS3Q969F9 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19■□□□□ 0.63
HPS3Q969F9 BMF-207ENST00000559701 630 ntTSL 3 BASIC19■□□□□ 0.63
HPS3Q969F9 COX5A-202ENST00000562233 441 ntTSL 3 BASIC19■□□□□ 0.63
HPS3Q969F9 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC19■□□□□ 0.63
HPS3Q969F9 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HPS3Q969F9 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC19■□□□□ 0.63
HPS3Q969F9 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC19■□□□□ 0.63
HPS3Q969F9 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC19■□□□□ 0.63
HPS3Q969F9 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
HPS3Q969F9 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 PCDHB17P-201ENST00000539533 2393 ntBASIC19■□□□□ 0.63
HPS3Q969F9 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19■□□□□ 0.63
HPS3Q969F9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
HPS3Q969F9 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19■□□□□ 0.63
HPS3Q969F9 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19■□□□□ 0.63
HPS3Q969F9 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19■□□□□ 0.63
HPS3Q969F9 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19■□□□□ 0.63
HPS3Q969F9 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19■□□□□ 0.63
HPS3Q969F9 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC19■□□□□ 0.63
HPS3Q969F9 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
HPS3Q969F9 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
HPS3Q969F9 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
HPS3Q969F9 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.99■□□□□ 0.63
HPS3Q969F9 AC079781.3-201ENST00000449110 356 ntBASIC18.99■□□□□ 0.63
HPS3Q969F9 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
HPS3Q969F9 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.99■□□□□ 0.63
HPS3Q969F9 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.99■□□□□ 0.63
HPS3Q969F9 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC18.99■□□□□ 0.63
HPS3Q969F9 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.99■□□□□ 0.63
HPS3Q969F9 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC18.99■□□□□ 0.63
HPS3Q969F9 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HPS3Q969F9 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.99■□□□□ 0.63
HPS3Q969F9 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.99■□□□□ 0.63
HPS3Q969F9 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HPS3Q969F9 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.98■□□□□ 0.63
HPS3Q969F9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.98■□□□□ 0.63
HPS3Q969F9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
HPS3Q969F9 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.98■□□□□ 0.63
HPS3Q969F9 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC18.98■□□□□ 0.63
HPS3Q969F9 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.98■□□□□ 0.63
HPS3Q969F9 AC124947.2-201ENST00000547118 1133 ntBASIC18.98■□□□□ 0.63
HPS3Q969F9 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.98■□□□□ 0.63
HPS3Q969F9 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.98■□□□□ 0.63
HPS3Q969F9 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
HPS3Q969F9 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC18.98■□□□□ 0.63
HPS3Q969F9 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC18.98■□□□□ 0.63
HPS3Q969F9 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.98■□□□□ 0.63
HPS3Q969F9 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC18.98■□□□□ 0.63
HPS3Q969F9 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HPS3Q969F9 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
HPS3Q969F9 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.97■□□□□ 0.63
HPS3Q969F9 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HPS3Q969F9 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC18.97■□□□□ 0.63
HPS3Q969F9 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms