RNA–Protein interactions for RNA: ENST00000396082.2

UPK3A-202, Transcript of uroplakin 3A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene UPK3A, Length 627 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3A-202ENST00000396082 NISCHQ9Y2I1 1504 aa42.76■■■■■ 4.44
UPK3A-202ENST00000396082 CCDC180Q9P1Z9 1646 aa38.16■■■■□ 3.7
UPK3A-202ENST00000396082 ABCC9O60706 1549 aa37.56■■■■□ 3.6
UPK3A-202ENST00000396082 RB1CC1Q8TDY2 1594 aa36.04■■■■□ 3.36
UPK3A-202ENST00000396082 NACADO15069 1562 aa35.91■■■■□ 3.34
UPK3A-202ENST00000396082 DCAF8L2P0C7V8 631 aa35.91■■■■□ 3.34
UPK3A-202ENST00000396082 ZCCHC6Q5VYS8 1495 aaKnown RBP35.58■■■■□ 3.29
UPK3A-202ENST00000396082 MYO15BQ96JP2 1530 aa35.57■■■■□ 3.28
UPK3A-202ENST00000396082 DCAF1Q9Y4B6 1507 aa35.34■■■■□ 3.25
UPK3A-202ENST00000396082 UNC13AQ9UPW8 1703 aa35.21■■■■□ 3.23
UPK3A-202ENST00000396082 PABPN1Q86U42 306 aaKnown RBP eCLIP35.04■■■■□ 3.2
UPK3A-202ENST00000396082 BICRAQ9NZM4 1560 aa34.89■■■■□ 3.18
UPK3A-202ENST00000396082 SCRIBQ14160 1630 aa34.83■■■■□ 3.17
UPK3A-202ENST00000396082 DNAJC5BQ9UF47 199 aa34.58■■■■□ 3.13
UPK3A-202ENST00000396082 SHROOM4Q9ULL8 1493 aa34.52■■■■□ 3.12
UPK3A-202ENST00000396082 EIF4G1Q04637 1599 aaKnown RBP34.03■■■■□ 3.04
UPK3A-202ENST00000396082 CC2D2AQ9P2K1 1620 aa33.96■■■■□ 3.03
UPK3A-202ENST00000396082 CECR2Q9BXF3 1484 aa33.76■■■■□ 3
UPK3A-202ENST00000396082 SMARCA4P51532 1647 aa33.26■■■□□ 2.91
UPK3A-202ENST00000396082 BAZ1AQ9NRL2 1556 aaPredicted RBP33.19■■■□□ 2.9
UPK3A-202ENST00000396082 ATAD2BQ9ULI0 1458 aa33.11■■■□□ 2.89
UPK3A-202ENST00000396082 NCAPD3P42695 1498 aa33.1■■■□□ 2.89
UPK3A-202ENST00000396082 SMARCA2P51531 1590 aa33.09■■■□□ 2.89
UPK3A-202ENST00000396082 HMGXB3Q12766 1538 aa32.96■■■□□ 2.87
UPK3A-202ENST00000396082 MROH2BQ7Z745 1585 aa32.96■■■□□ 2.87
UPK3A-202ENST00000396082 PEG3Q9GZU2 1588 aa32.89■■■□□ 2.86
UPK3A-202ENST00000396082 BAZ1BQ9UIG0 1483 aaKnown RBP32.87■■■□□ 2.85
UPK3A-202ENST00000396082 WIZO95785 1651 aa32.62■■■□□ 2.81
UPK3A-202ENST00000396082 RSF1Q96T23 1441 aaPredicted RBP32.48■■■□□ 2.79
UPK3A-202ENST00000396082 ERCC6Q03468 1493 aa32.44■■■□□ 2.78
UPK3A-202ENST00000396082 NESP48681 1621 aa32.41■■■□□ 2.78
UPK3A-202ENST00000396082 LAMC3Q9Y6N6 1575 aa32.32■■■□□ 2.76
UPK3A-202ENST00000396082 TOP2AP11388 1531 aaKnown RBP32.26■■■□□ 2.75
UPK3A-202ENST00000396082 CADPSQ9ULU8 1353 aa32.14■■■□□ 2.74
UPK3A-202ENST00000396082 CUX2O14529 1486 aa32.11■■■□□ 2.73
UPK3A-202ENST00000396082 PDS5BQ9NTI5 1447 aa32.11■■■□□ 2.73
UPK3A-202ENST00000396082 KIF21AQ7Z4S6 1674 aa32.06■■■□□ 2.72
UPK3A-202ENST00000396082 THOC2Q8NI27 1593 aaKnown RBP31.98■■■□□ 2.71
UPK3A-202ENST00000396082 CFTRP13569 1480 aa31.9■■■□□ 2.7
UPK3A-202ENST00000396082 CCDC88BA6NC98 1476 aa31.85■■■□□ 2.69
UPK3A-202ENST00000396082 FANCD2Q9BXW9 1451 aa31.81■■■□□ 2.68
UPK3A-202ENST00000396082 CEP164Q9UPV0 1460 aa31.81■■■□□ 2.68
UPK3A-202ENST00000396082 MRC2Q9UBG0 1479 aa31.79■■■□□ 2.68
UPK3A-202ENST00000396082 PRDM2Q13029 1718 aa31.72■■■□□ 2.67
UPK3A-202ENST00000396082 WDR62O43379 1518 aa31.69■■■□□ 2.66
UPK3A-202ENST00000396082 SUPT5HO00267 1087 aaKnown RBP31.58■■■□□ 2.65
UPK3A-202ENST00000396082 URB2Q14146 1524 aaKnown RBP31.48■■■□□ 2.63
UPK3A-202ENST00000396082 DNAJC5Q9H3Z4 198 aa31.35■■■□□ 2.61
UPK3A-202ENST00000396082 TOPBP1Q92547 1522 aa31.27■■■□□ 2.6
UPK3A-202ENST00000396082 ABCC8Q09428 1581 aa31.26■■■□□ 2.59
UPK3A-202ENST00000396082 DNMBPQ6XZF7 1577 aa31.22■■■□□ 2.59
UPK3A-202ENST00000396082 IFT140Q96RY7 1462 aa31.13■■■□□ 2.57
UPK3A-202ENST00000396082 ZNF608Q9ULD9 1512 aaPredicted RBP30.99■■■□□ 2.55
UPK3A-202ENST00000396082 POLA1P09884 1462 aaPredicted RBP30.98■■■□□ 2.55
UPK3A-202ENST00000396082 CUX1P39880 1505 aa30.94■■■□□ 2.54
UPK3A-202ENST00000396082 TARBP1Q13395 1621 aaKnown RBP30.92■■■□□ 2.54
UPK3A-202ENST00000396082 EIF4G3O43432 1585 aaKnown RBP30.91■■■□□ 2.54
UPK3A-202ENST00000396082 FGD5Q6ZNL6 1462 aa30.89■■■□□ 2.54
UPK3A-202ENST00000396082 RAD54L2Q9Y4B4 1467 aa30.86■■■□□ 2.53
UPK3A-202ENST00000396082 SOGA1O94964 1423 aa30.85■■■□□ 2.53
UPK3A-202ENST00000396082 AQRO60306 1485 aaKnown RBP eCLIP30.8■■■□□ 2.52
UPK3A-202ENST00000396082 OSCARQ8IYS5 282 aa30.74■■■□□ 2.51
UPK3A-202ENST00000396082 TDRD9Q8NDG6 1382 aaKnown RBP30.71■■■□□ 2.51
UPK3A-202ENST00000396082 WDR97A6NE52 1622 aa30.69■■■□□ 2.5
UPK3A-202ENST00000396082 WRNQ14191 1432 aaPredicted RBP eCLIP30.68■■■□□ 2.5
UPK3A-202ENST00000396082 BIVM-ERCC5R4GMW8 1640 aa30.63■■■□□ 2.49
UPK3A-202ENST00000396082 TOP2BQ02880 1626 aa30.62■■■□□ 2.49
UPK3A-202ENST00000396082 SYNJ1O43426 1573 aa30.61■■■□□ 2.49
UPK3A-202ENST00000396082 CHD1O14646 1710 aa30.58■■■□□ 2.49
UPK3A-202ENST00000396082 ABCA10Q8WWZ4 1543 aa30.56■■■□□ 2.48
UPK3A-202ENST00000396082 FBLN2P98095 1184 aa30.54■■■□□ 2.48
UPK3A-202ENST00000396082 GRIN2BQ13224 1484 aa30.53■■■□□ 2.48
UPK3A-202ENST00000396082 SNAPC4Q5SXM2 1469 aa30.53■■■□□ 2.48
UPK3A-202ENST00000396082 GAPVD1Q14C86 1478 aa30.5■■■□□ 2.47
UPK3A-202ENST00000396082 PBRM1Q86U86 1689 aa30.5■■■□□ 2.47
UPK3A-202ENST00000396082 ABCA5Q8WWZ7 1642 aa30.47■■■□□ 2.47
UPK3A-202ENST00000396082 MAGI1Q96QZ7 1491 aaPredicted RBP30.47■■■□□ 2.47
UPK3A-202ENST00000396082 CHMP7Q8WUX9 453 aaPredicted RBP30.39■■■□□ 2.46
UPK3A-202ENST00000396082 SYNJ2O15056 1496 aa30.36■■■□□ 2.45
UPK3A-202ENST00000396082 TRIM41Q8WV44 630 aa30.33■■■□□ 2.45
UPK3A-202ENST00000396082 RIMBP3CA6NJZ7 1639 aa30.29■■■□□ 2.44
UPK3A-202ENST00000396082 RIMBP3BA6NNM3 1639 aa30.29■■■□□ 2.44
UPK3A-202ENST00000396082 RIMBP3Q9UFD9 1639 aa30.29■■■□□ 2.44
UPK3A-202ENST00000396082 ARHGEF11O15085 1522 aa30.26■■■□□ 2.43
UPK3A-202ENST00000396082 ADAMTS12P58397 1594 aa30.22■■■□□ 2.43
UPK3A-202ENST00000396082 ERICH3Q5RHP9 1530 aa30.2■■■□□ 2.42
UPK3A-202ENST00000396082 CLASP1Q7Z460 1538 aa30.18■■■□□ 2.42
UPK3A-202ENST00000396082 GRIN2AQ12879 1464 aa30.14■■■□□ 2.42
UPK3A-202ENST00000396082 FHAD1B1AJZ9 1412 aa30.13■■■□□ 2.41
UPK3A-202ENST00000396082 KIF27Q86VH2 1401 aa30.06■■■□□ 2.4
UPK3A-202ENST00000396082 CYB5RLQ6IPT4 315 aa30■■■□□ 2.39
UPK3A-202ENST00000396082 CEP170Q5SW79 1584 aa29.99■■■□□ 2.39
UPK3A-202ENST00000396082 ARAP1Q96P48 1450 aa29.99■■■□□ 2.39
UPK3A-202ENST00000396082 NUP160Q12769 1436 aa29.98■■■□□ 2.39
UPK3A-202ENST00000396082 CUL7Q14999 1698 aa29.92■■■□□ 2.38
UPK3A-202ENST00000396082 IGF1RP08069 1367 aa29.9■■■□□ 2.38
UPK3A-202ENST00000396082 SHROOM2Q13796 1616 aa29.79■■■□□ 2.36
UPK3A-202ENST00000396082 RUSC2Q8N2Y8 1516 aa29.77■■■□□ 2.36
UPK3A-202ENST00000396082 CARMIL1Q5VZK9 1371 aa29.77■■■□□ 2.36
UPK3A-202ENST00000396082 ERCC6L2Q5T890 1561 aa29.75■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms