Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUP98P52948 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC21.12■□□□□ 0.97
NUP98P52948 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.12■□□□□ 0.97
NUP98P52948 FAM207CP-201ENST00000443486 507 ntBASIC21.12■□□□□ 0.97
NUP98P52948 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC21.12■□□□□ 0.97
NUP98P52948 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
NUP98P52948 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC21.12■□□□□ 0.97
NUP98P52948 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUP98P52948 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
NUP98P52948 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUP98P52948 AC108860.2-201ENST00000562760 2183 ntBASIC21.12■□□□□ 0.97
NUP98P52948 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUP98P52948 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
NUP98P52948 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
NUP98P52948 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NUP98P52948 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC21.11■□□□□ 0.97
NUP98P52948 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC21.11■□□□□ 0.97
NUP98P52948 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
NUP98P52948 TSSK5P-201ENST00000423978 907 ntBASIC21.11■□□□□ 0.97
NUP98P52948 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.11■□□□□ 0.97
NUP98P52948 AC004890.2-204ENST00000481968 304 ntBASIC21.11■□□□□ 0.97
NUP98P52948 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC21.11■□□□□ 0.97
NUP98P52948 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC21.11■□□□□ 0.97
NUP98P52948 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC21.11■□□□□ 0.97
NUP98P52948 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.11■□□□□ 0.97
NUP98P52948 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
NUP98P52948 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
NUP98P52948 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
NUP98P52948 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC21.11■□□□□ 0.97
NUP98P52948 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC21.11■□□□□ 0.97
NUP98P52948 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC21.11■□□□□ 0.97
NUP98P52948 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.11■□□□□ 0.97
NUP98P52948 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC21.11■□□□□ 0.97
NUP98P52948 AC073389.1-201ENST00000595595 795 ntBASIC21.11■□□□□ 0.97
NUP98P52948 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.11■□□□□ 0.97
NUP98P52948 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
NUP98P52948 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
NUP98P52948 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
NUP98P52948 AC100757.3-201ENST00000622361 1406 ntBASIC21.1■□□□□ 0.97
NUP98P52948 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC21.1■□□□□ 0.97
NUP98P52948 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC21.1■□□□□ 0.97
NUP98P52948 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.1■□□□□ 0.97
NUP98P52948 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
NUP98P52948 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NUP98P52948 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 MIR943-201ENST00000401286 94 ntBASIC21.1■□□□□ 0.97
NUP98P52948 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC21.1■□□□□ 0.97
NUP98P52948 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NUP98P52948 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC21.1■□□□□ 0.97
NUP98P52948 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC21.1■□□□□ 0.97
NUP98P52948 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 AL138918.1-201ENST00000568306 659 ntBASIC21.1■□□□□ 0.97
NUP98P52948 MIR4453-201ENST00000584019 89 ntBASIC21.1■□□□□ 0.97
NUP98P52948 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
NUP98P52948 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC21.1■□□□□ 0.97
NUP98P52948 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NUP98P52948 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC21.1■□□□□ 0.97
NUP98P52948 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NUP98P52948 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC21.1■□□□□ 0.97
NUP98P52948 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC21.09■□□□□ 0.97
NUP98P52948 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC21.09■□□□□ 0.97
NUP98P52948 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUP98P52948 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21.09■□□□□ 0.97
NUP98P52948 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
NUP98P52948 PRYP6-201ENST00000514804 343 ntBASIC21.09■□□□□ 0.97
NUP98P52948 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC21.09■□□□□ 0.97
NUP98P52948 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.09■□□□□ 0.97
NUP98P52948 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.09■□□□□ 0.97
NUP98P52948 AP3S2-216ENST00000617003 1561 ntBASIC21.09■□□□□ 0.97
NUP98P52948 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC21.09■□□□□ 0.97
NUP98P52948 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC21.09■□□□□ 0.97
NUP98P52948 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NUP98P52948 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
NUP98P52948 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms