Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.07■□□□□ 0.48
APOEP02649 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
APOEP02649 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.07■□□□□ 0.48
APOEP02649 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
APOEP02649 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.07■□□□□ 0.48
APOEP02649 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
APOEP02649 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.07■□□□□ 0.48
APOEP02649 FDX1P1-201ENST00000449115 551 ntBASIC18.07■□□□□ 0.48
APOEP02649 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.07■□□□□ 0.48
APOEP02649 OR7E14P-202ENST00000530490 1290 ntBASIC18.07■□□□□ 0.48
APOEP02649 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.07■□□□□ 0.48
APOEP02649 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC18.07■□□□□ 0.48
APOEP02649 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.07■□□□□ 0.48
APOEP02649 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.07■□□□□ 0.48
APOEP02649 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
APOEP02649 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
APOEP02649 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
APOEP02649 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC18.07■□□□□ 0.48
APOEP02649 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.06■□□□□ 0.48
APOEP02649 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
APOEP02649 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.06■□□□□ 0.48
APOEP02649 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
APOEP02649 LAGE3P1-201ENST00000425356 484 ntBASIC18.06■□□□□ 0.48
APOEP02649 RPS2P1-201ENST00000434010 821 ntBASIC18.06■□□□□ 0.48
APOEP02649 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.06■□□□□ 0.48
APOEP02649 AP001005.1-201ENST00000571755 1248 ntBASIC18.06■□□□□ 0.48
APOEP02649 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.06■□□□□ 0.48
APOEP02649 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC18.06■□□□□ 0.48
APOEP02649 AC148477.8-201ENST00000624298 468 ntBASIC18.06■□□□□ 0.48
APOEP02649 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC18.06■□□□□ 0.48
APOEP02649 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.06■□□□□ 0.48
APOEP02649 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
APOEP02649 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.06■□□□□ 0.48
APOEP02649 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.06■□□□□ 0.48
APOEP02649 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.06■□□□□ 0.48
APOEP02649 AP001094.4-201ENST00000579008 2176 ntBASIC18.06■□□□□ 0.48
APOEP02649 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
APOEP02649 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.05■□□□□ 0.48
APOEP02649 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.05■□□□□ 0.48
APOEP02649 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.05■□□□□ 0.48
APOEP02649 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
APOEP02649 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC18.05■□□□□ 0.48
APOEP02649 AL031284.1-201ENST00000419297 478 ntBASIC18.05■□□□□ 0.48
APOEP02649 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.05■□□□□ 0.48
APOEP02649 AC093909.1-201ENST00000504731 1122 ntBASIC18.05■□□□□ 0.48
APOEP02649 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.05■□□□□ 0.48
APOEP02649 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.05■□□□□ 0.48
APOEP02649 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.05■□□□□ 0.48
APOEP02649 AC107918.4-202ENST00000641623 219 ntBASIC18.05■□□□□ 0.48
APOEP02649 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
APOEP02649 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.05■□□□□ 0.48
APOEP02649 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 CROCCP2-202ENST00000412962 2773 ntBASIC18.05■□□□□ 0.48
APOEP02649 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.05■□□□□ 0.48
APOEP02649 NCF1C-201ENST00000438382 1427 ntBASIC18.05■□□□□ 0.48
APOEP02649 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
APOEP02649 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
APOEP02649 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.05■□□□□ 0.48
APOEP02649 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
APOEP02649 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
APOEP02649 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
APOEP02649 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 CROCCP1-201ENST00000426910 5675 ntBASIC18.04■□□□□ 0.48
APOEP02649 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
APOEP02649 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
APOEP02649 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms