Protein–RNA interactions for Protein: Q9Y221

NIP7, 60S ribosome subunit biogenesis protein NIP7 homolog, humanhuman

Known RBP eCLIP

Length 180 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIP7Q9Y221 HSPA8-201ENST00000227378 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.093e-26■□□□□ 9.3
NIP7Q9Y221 HSPA8-218ENST00000532636 2306 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.573e-26■□□□□ 9.3
NIP7Q9Y221 HSPA8-215ENST00000532091 2301 ntTSL 510.87□□□□□ -0.673e-26■□□□□ 9.3
NIP7Q9Y221 HSPA8-220ENST00000533238 465 ntTSL 38.15□□□□□ -1.13e-26■□□□□ 9.3
NIP7Q9Y221 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC23.41■■□□□ 1.342e-9■□□□□ 9.3
NIP7Q9Y221 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.162e-9■□□□□ 9.3
NIP7Q9Y221 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC18■□□□□ 0.472e-10■□□□□ 9.3
NIP7Q9Y221 C2-204ENST00000413154 561 ntTSL 417.89■□□□□ 0.452e-10■□□□□ 9.3
NIP7Q9Y221 C2-207ENST00000447952 837 ntTSL 317.79■□□□□ 0.442e-10■□□□□ 9.3
NIP7Q9Y221 C2-208ENST00000452202 539 ntTSL 416.72■□□□□ 0.272e-10■□□□□ 9.3
NIP7Q9Y221 CST3-203ENST00000398411 3286 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.132e-9■□□□□ 9.3
NIP7Q9Y221 C3-218ENST00000602229 585 ntTSL 213.32□□□□□ -0.286e-20■□□□□ 9.3
NIP7Q9Y221 SNORD65-201ENST00000391079 73 ntBASIC4.8□□□□□ -1.641e-323■□□□□ 9.2
NIP7Q9Y221 AGRN-208ENST00000479707 584 ntTSL 324.35■■□□□ 1.498e-14■□□□□ 9.2
NIP7Q9Y221 HSPA8-211ENST00000527983 1509 ntTSL 1 (best)14.66□□□□□ -0.061e-323■□□□□ 9.1
NIP7Q9Y221 HSPA8-209ENST00000526862 504 ntTSL 36.05□□□□□ -1.441e-323■□□□□ 9.1
NIP7Q9Y221 SNORD14C-201ENST00000365382 88 ntBASIC-0.5□□□□□ -2.491e-323■□□□□ 9.1
NIP7Q9Y221 DLK1-204ENST00000555747 538 ntTSL 427.85■■■□□ 2.055e-9■□□□□ 9.1
NIP7Q9Y221 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.125e-9■□□□□ 9.1
NIP7Q9Y221 DLK1-203ENST00000392848 555 ntTSL 420.35■□□□□ 0.855e-9■□□□□ 9.1
NIP7Q9Y221 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC18.36■□□□□ 0.535e-9■□□□□ 9.1
NIP7Q9Y221 DLK1-205ENST00000556051 469 ntTSL 2 BASIC17.64■□□□□ 0.415e-9■□□□□ 9.1
NIP7Q9Y221 SNORD111B-201ENST00000408587 80 ntBASIC-3.36□□□□□ -2.957e-39■□□□□ 9.1
NIP7Q9Y221 RPL3-203ENST00000402527 1205 ntTSL 523.74■■□□□ 1.391e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.321e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC18.58■□□□□ 0.561e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-215ENST00000481985 557 ntTSL 217.95■□□□□ 0.461e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-211ENST00000465618 2108 ntTSL 1 (best)17.91■□□□□ 0.461e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-206ENST00000453303 916 ntTSL 517.42■□□□□ 0.381e-323■□□□□ 9.1
NIP7Q9Y221 RPL3-213ENST00000471290 481 ntTSL 214.69□□□□□ -0.061e-323■□□□□ 9.1
NIP7Q9Y221 SNORD83A-201ENST00000386747 95 ntBASIC11.65□□□□□ -0.541e-323■□□□□ 9.1
NIP7Q9Y221 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.831e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-209ENST00000520644 377 ntTSL 526.13■■□□□ 1.771e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-212ENST00000524285 570 ntTSL 423.28■■□□□ 1.321e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-206ENST00000517552 576 ntTSL 322.98■■□□□ 1.271e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.651e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-211ENST00000522881 560 ntTSL 515.95■□□□□ 0.141e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-204ENST00000381237 4641 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.181e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-203ENST00000359741 4641 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.191e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-210ENST00000520832 578 ntTSL 411.51□□□□□ -0.571e-8■□□□□ 9
NIP7Q9Y221 SLC39A14-208ENST00000519960 467 ntTSL 410.38□□□□□ -0.751e-8■□□□□ 9
NIP7Q9Y221 RPS2-211ENST00000531065 1548 ntTSL 535.39■■■■□ 3.261e-7■□□□□ 9
NIP7Q9Y221 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.41■■■■□ 3.11e-7■□□□□ 9
NIP7Q9Y221 RPS2-202ENST00000526522 924 ntTSL 2 BASIC33.99■■■■□ 3.031e-7■□□□□ 9
NIP7Q9Y221 RPS2-205ENST00000527109 1030 ntTSL 1 (best)33.99■■■■□ 3.031e-7■□□□□ 9
NIP7Q9Y221 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.011e-7■□□□□ 9
NIP7Q9Y221 RPS2-210ENST00000530225 765 ntTSL 2 BASIC32.33■■■□□ 2.771e-7■□□□□ 9
NIP7Q9Y221 RPS2-208ENST00000527871 1243 ntTSL 1 (best)32.21■■■□□ 2.751e-7■□□□□ 9
NIP7Q9Y221 RPS2-213ENST00000533161 1186 ntTSL 1 (best)31.76■■■□□ 2.671e-7■□□□□ 9
NIP7Q9Y221 RPS2-215ENST00000533872 1114 ntTSL 531.44■■■□□ 2.621e-7■□□□□ 9
NIP7Q9Y221 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.821e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-212ENST00000576323 574 ntTSL 421.46■■□□□ 1.031e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-206ENST00000572352 538 ntTSL 420.16■□□□□ 0.821e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-205ENST00000572094 986 ntTSL 519.9■□□□□ 0.781e-7■□□□□ 9
NIP7Q9Y221 RACK1-203ENST00000502844 1460 ntTSL 318.96■□□□□ 0.634e-11■□□□□ 9
NIP7Q9Y221 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.7■□□□□ 0.581e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC17.3■□□□□ 0.361e-7■□□□□ 9
NIP7Q9Y221 RACK1-230ENST00000513060 1651 ntTSL 517.19■□□□□ 0.344e-11■□□□□ 9
NIP7Q9Y221 RACK1-202ENST00000502548 1090 ntTSL 1 (best)16.83■□□□□ 0.284e-11■□□□□ 9
NIP7Q9Y221 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.281e-7■□□□□ 9
NIP7Q9Y221 PSAP-203ENST00000493143 576 ntTSL 216.13■□□□□ 0.171e-7■□□□□ 9
NIP7Q9Y221 SLC13A5-210ENST00000574824 2506 ntTSL 215.39■□□□□ 0.051e-7■□□□□ 9
NIP7Q9Y221 RACK1-223ENST00000510199 1100 ntTSL 315.08■□□□□ 04e-11■□□□□ 9
NIP7Q9Y221 RACK1-229ENST00000513027 697 ntTSL 315.08■□□□□ 04e-11■□□□□ 9
NIP7Q9Y221 TNS1-207ENST00000430930 5900 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.031e-7■□□□□ 9
NIP7Q9Y221 TNS1-205ENST00000419504 5921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.031e-7■□□□□ 9
NIP7Q9Y221 G6PC-202ENST00000585489 1097 ntTSL 5 BASIC14.14□□□□□ -0.151e-7■□□□□ 9
NIP7Q9Y221 RACK1-218ENST00000508044 554 ntTSL 513.92□□□□□ -0.184e-11■□□□□ 9
NIP7Q9Y221 RACK1-227ENST00000512805 1403 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.184e-11■□□□□ 9
NIP7Q9Y221 TNS1-220ENST00000611415 6509 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.261e-7■□□□□ 9
NIP7Q9Y221 RACK1-204ENST00000502890 705 ntTSL 313.15□□□□□ -0.34e-11■□□□□ 9
NIP7Q9Y221 RACK1-224ENST00000511473 1150 ntTSL 513.01□□□□□ -0.334e-11■□□□□ 9
NIP7Q9Y221 RACK1-225ENST00000511566 825 ntTSL 3 BASIC13.01□□□□□ -0.334e-11■□□□□ 9
NIP7Q9Y221 RACK1-226ENST00000511900 922 ntTSL 5 BASIC12.94□□□□□ -0.344e-11■□□□□ 9
NIP7Q9Y221 RACK1-219ENST00000508682 1208 ntTSL 512.79□□□□□ -0.364e-11■□□□□ 9
NIP7Q9Y221 TNS1-221ENST00000615025 6488 ntTSL 5 BASIC12.65□□□□□ -0.381e-7■□□□□ 9
NIP7Q9Y221 RACK1-234ENST00000515417 873 ntTSL 312.58□□□□□ -0.44e-11■□□□□ 9
NIP7Q9Y221 RPS2-203ENST00000526586 878 ntTSL 212.46□□□□□ -0.411e-7■□□□□ 9
NIP7Q9Y221 RACK1-228ENST00000512968 1058 ntTSL 512.23□□□□□ -0.454e-11■□□□□ 9
NIP7Q9Y221 G6PC-204ENST00000592383 987 ntTSL 2 BASIC12.14□□□□□ -0.471e-7■□□□□ 9
NIP7Q9Y221 RACK1-205ENST00000502905 643 ntTSL 312.13□□□□□ -0.474e-11■□□□□ 9
NIP7Q9Y221 RACK1-208ENST00000503494 843 ntTSL 312.09□□□□□ -0.474e-11■□□□□ 9
NIP7Q9Y221 RACK1-210ENST00000504325 1098 ntTSL 1 (best)11.97□□□□□ -0.494e-11■□□□□ 9
NIP7Q9Y221 SLC13A5-201ENST00000293800 3176 ntTSL 2 BASIC11.77□□□□□ -0.531e-7■□□□□ 9
NIP7Q9Y221 RPS2-212ENST00000532746 931 ntTSL 311.73□□□□□ -0.531e-7■□□□□ 9
NIP7Q9Y221 RPS2-214ENST00000533186 625 ntTSL 311.73□□□□□ -0.531e-7■□□□□ 9
NIP7Q9Y221 RACK1-217ENST00000507756 889 ntTSL 511.58□□□□□ -0.564e-11■□□□□ 9
NIP7Q9Y221 RACK1-222ENST00000509535 456 ntTSL 311.58□□□□□ -0.564e-11■□□□□ 9
NIP7Q9Y221 TNS1-209ENST00000446688 4292 ntTSL 1 (best) BASIC11.51□□□□□ -0.571e-7■□□□□ 9
NIP7Q9Y221 RACK1-211ENST00000504726 388 ntTSL 5 BASIC11.22□□□□□ -0.614e-11■□□□□ 9
NIP7Q9Y221 RACK1-206ENST00000503081 587 ntTSL 311.17□□□□□ -0.624e-11■□□□□ 9
NIP7Q9Y221 RACK1-201ENST00000376817 965 ntTSL 5 BASIC10.94□□□□□ -0.664e-11■□□□□ 9
NIP7Q9Y221 RACK1-209ENST00000504128 990 ntTSL 210.94□□□□□ -0.664e-11■□□□□ 9
NIP7Q9Y221 RACK1-213ENST00000506312 559 ntTSL 510.94□□□□□ -0.664e-11■□□□□ 9
NIP7Q9Y221 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.81e-7■□□□□ 9
NIP7Q9Y221 G6PC-203ENST00000588481 604 ntTSL 29.2□□□□□ -0.941e-7■□□□□ 9
NIP7Q9Y221 RACK1-214ENST00000507000 685 ntTSL 59.17□□□□□ -0.944e-11■□□□□ 9
NIP7Q9Y221 RACK1-231ENST00000514183 1439 ntTSL 28.55□□□□□ -1.044e-11■□□□□ 9
NIP7Q9Y221 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.231e-7■□□□□ 9
NIP7Q9Y221 MT-TM-201ENST00000387377 68 ntBASIC-2.45□□□□□ -2.81e-323■□□□□ 8.9
Retrieved 100 of 1,619 protein–RNA pairs in 718.5 ms