Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC18.59■□□□□ 0.57
NOTCH3Q9UM47 ADAP1-201ENST00000265846 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NOTCH3Q9UM47 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NOTCH3Q9UM47 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC18.58■□□□□ 0.57
NOTCH3Q9UM47 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
NOTCH3Q9UM47 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
NOTCH3Q9UM47 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.58■□□□□ 0.56
NOTCH3Q9UM47 MIR935-201ENST00000401179 91 ntBASIC18.58■□□□□ 0.56
NOTCH3Q9UM47 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NOTCH3Q9UM47 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC18.58■□□□□ 0.56
NOTCH3Q9UM47 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC18.57■□□□□ 0.56
NOTCH3Q9UM47 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
NOTCH3Q9UM47 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
NOTCH3Q9UM47 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
NOTCH3Q9UM47 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.56■□□□□ 0.56
NOTCH3Q9UM47 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC18.56■□□□□ 0.56
NOTCH3Q9UM47 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.56■□□□□ 0.56
NOTCH3Q9UM47 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 AC087393.1-201ENST00000582896 145 ntBASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
NOTCH3Q9UM47 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 AL359504.2-201ENST00000605506 1601 ntBASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
NOTCH3Q9UM47 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NOTCH3Q9UM47 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NOTCH3Q9UM47 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
NOTCH3Q9UM47 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
NOTCH3Q9UM47 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
NOTCH3Q9UM47 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
NOTCH3Q9UM47 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
NOTCH3Q9UM47 KRT125P-201ENST00000546827 989 ntBASIC18.52■□□□□ 0.56
NOTCH3Q9UM47 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 AC019171.1-201ENST00000601251 1056 ntBASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NOTCH3Q9UM47 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC18.5■□□□□ 0.55
NOTCH3Q9UM47 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC18.5■□□□□ 0.55
NOTCH3Q9UM47 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NOTCH3Q9UM47 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NOTCH3Q9UM47 AC022616.5-201ENST00000518796 181 ntBASIC18.5■□□□□ 0.55
NOTCH3Q9UM47 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NOTCH3Q9UM47 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
NOTCH3Q9UM47 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
NOTCH3Q9UM47 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC18.49■□□□□ 0.55
NOTCH3Q9UM47 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NOTCH3Q9UM47 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NOTCH3Q9UM47 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
NOTCH3Q9UM47 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NOTCH3Q9UM47 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NOTCH3Q9UM47 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
NOTCH3Q9UM47 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 PPAN-202ENST00000393793 1575 ntTSL 5 BASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 RPS2P7-201ENST00000447334 885 ntBASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.48■□□□□ 0.55
NOTCH3Q9UM47 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
NOTCH3Q9UM47 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NOTCH3Q9UM47 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
NOTCH3Q9UM47 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.47■□□□□ 0.55
NOTCH3Q9UM47 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NOTCH3Q9UM47 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms