Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
RPAP1Q9BWH6 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC29.54■■■□□ 2.32
RPAP1Q9BWH6 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
RPAP1Q9BWH6 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
RPAP1Q9BWH6 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC29.54■■■□□ 2.32
RPAP1Q9BWH6 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
RPAP1Q9BWH6 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC29.53■■■□□ 2.32
RPAP1Q9BWH6 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC29.53■■■□□ 2.32
RPAP1Q9BWH6 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
RPAP1Q9BWH6 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
RPAP1Q9BWH6 AL451085.2-201ENST00000605085 799 ntBASIC29.52■■■□□ 2.32
RPAP1Q9BWH6 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC29.52■■■□□ 2.32
RPAP1Q9BWH6 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RPAP1Q9BWH6 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RPAP1Q9BWH6 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
RPAP1Q9BWH6 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC29.52■■■□□ 2.32
RPAP1Q9BWH6 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RPAP1Q9BWH6 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
RPAP1Q9BWH6 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC29.52■■■□□ 2.32
RPAP1Q9BWH6 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
RPAP1Q9BWH6 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
RPAP1Q9BWH6 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC29.51■■■□□ 2.31
RPAP1Q9BWH6 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC29.5■■■□□ 2.31
RPAP1Q9BWH6 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC29.5■■■□□ 2.31
RPAP1Q9BWH6 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
RPAP1Q9BWH6 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC29.5■■■□□ 2.31
RPAP1Q9BWH6 AL035685.1-201ENST00000636663 812 ntBASIC29.5■■■□□ 2.31
RPAP1Q9BWH6 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC29.49■■■□□ 2.31
RPAP1Q9BWH6 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
RPAP1Q9BWH6 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC29.49■■■□□ 2.31
RPAP1Q9BWH6 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
RPAP1Q9BWH6 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC29.48■■■□□ 2.31
RPAP1Q9BWH6 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC29.48■■■□□ 2.31
RPAP1Q9BWH6 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
RPAP1Q9BWH6 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC29.47■■■□□ 2.31
RPAP1Q9BWH6 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
RPAP1Q9BWH6 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC29.47■■■□□ 2.31
RPAP1Q9BWH6 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
RPAP1Q9BWH6 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC29.46■■■□□ 2.31
RPAP1Q9BWH6 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
RPAP1Q9BWH6 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC29.46■■■□□ 2.31
RPAP1Q9BWH6 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
RPAP1Q9BWH6 AC074183.2-201ENST00000623112 922 ntBASIC29.46■■■□□ 2.31
RPAP1Q9BWH6 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
RPAP1Q9BWH6 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
RPAP1Q9BWH6 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
RPAP1Q9BWH6 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.31
RPAP1Q9BWH6 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC29.45■■■□□ 2.3
RPAP1Q9BWH6 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
RPAP1Q9BWH6 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
RPAP1Q9BWH6 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC29.44■■■□□ 2.3
RPAP1Q9BWH6 MIR6765-201ENST00000614092 87 ntBASIC29.44■■■□□ 2.3
RPAP1Q9BWH6 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
RPAP1Q9BWH6 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
RPAP1Q9BWH6 AP004609.3-201ENST00000610705 1884 ntBASIC29.43■■■□□ 2.3
RPAP1Q9BWH6 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
RPAP1Q9BWH6 AL359504.2-201ENST00000605506 1601 ntBASIC29.42■■■□□ 2.3
RPAP1Q9BWH6 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
RPAP1Q9BWH6 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC29.42■■■□□ 2.3
RPAP1Q9BWH6 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
RPAP1Q9BWH6 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
RPAP1Q9BWH6 TRIR-205ENST00000592273 783 ntTSL 3 BASIC29.41■■■□□ 2.3
RPAP1Q9BWH6 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC29.41■■■□□ 2.3
RPAP1Q9BWH6 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
RPAP1Q9BWH6 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC29.4■■■□□ 2.3
RPAP1Q9BWH6 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
RPAP1Q9BWH6 AC142472.1-201ENST00000612013 1741 ntBASIC29.4■■■□□ 2.3
RPAP1Q9BWH6 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC29.4■■■□□ 2.3
RPAP1Q9BWH6 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC29.39■■■□□ 2.3
RPAP1Q9BWH6 AC010980.1-201ENST00000587192 1142 ntBASIC29.39■■■□□ 2.3
RPAP1Q9BWH6 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC29.39■■■□□ 2.3
RPAP1Q9BWH6 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC29.39■■■□□ 2.3
RPAP1Q9BWH6 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.3
RPAP1Q9BWH6 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC29.39■■■□□ 2.3
RPAP1Q9BWH6 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC29.39■■■□□ 2.29
RPAP1Q9BWH6 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC29.39■■■□□ 2.29
RPAP1Q9BWH6 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC29.39■■■□□ 2.29
RPAP1Q9BWH6 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC29.39■■■□□ 2.29
RPAP1Q9BWH6 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
RPAP1Q9BWH6 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC29.37■■■□□ 2.29
RPAP1Q9BWH6 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
RPAP1Q9BWH6 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC29.37■■■□□ 2.29
RPAP1Q9BWH6 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
RPAP1Q9BWH6 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
RPAP1Q9BWH6 BEX3-202ENST00000372634 753 ntTSL 2 BASIC29.37■■■□□ 2.29
RPAP1Q9BWH6 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC29.36■■■□□ 2.29
RPAP1Q9BWH6 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.36■■■□□ 2.29
RPAP1Q9BWH6 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC29.36■■■□□ 2.29
RPAP1Q9BWH6 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC29.35■■■□□ 2.29
RPAP1Q9BWH6 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
RPAP1Q9BWH6 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC29.35■■■□□ 2.29
RPAP1Q9BWH6 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
RPAP1Q9BWH6 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC29.35■■■□□ 2.29
RPAP1Q9BWH6 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
RPAP1Q9BWH6 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC29.35■■■□□ 2.29
RPAP1Q9BWH6 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
RPAP1Q9BWH6 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
RPAP1Q9BWH6 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC29.34■■■□□ 2.29
RPAP1Q9BWH6 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC29.34■■■□□ 2.29
RPAP1Q9BWH6 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC29.34■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms