Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC31.77■■■□□ 2.68
RTF1Q92541 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
RTF1Q92541 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC31.76■■■□□ 2.68
RTF1Q92541 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC31.76■■■□□ 2.68
RTF1Q92541 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
RTF1Q92541 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
RTF1Q92541 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC31.76■■■□□ 2.67
RTF1Q92541 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
RTF1Q92541 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
RTF1Q92541 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC31.75■■■□□ 2.67
RTF1Q92541 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC31.75■■■□□ 2.67
RTF1Q92541 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
RTF1Q92541 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
RTF1Q92541 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
RTF1Q92541 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC31.74■■■□□ 2.67
RTF1Q92541 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.74■■■□□ 2.67
RTF1Q92541 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC31.74■■■□□ 2.67
RTF1Q92541 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC31.73■■■□□ 2.67
RTF1Q92541 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
RTF1Q92541 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.73■■■□□ 2.67
RTF1Q92541 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
RTF1Q92541 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
RTF1Q92541 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
RTF1Q92541 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC31.73■■■□□ 2.67
RTF1Q92541 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
RTF1Q92541 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC31.72■■■□□ 2.67
RTF1Q92541 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC31.72■■■□□ 2.67
RTF1Q92541 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.72■■■□□ 2.67
RTF1Q92541 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
RTF1Q92541 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
RTF1Q92541 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC31.71■■■□□ 2.67
RTF1Q92541 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
RTF1Q92541 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC31.71■■■□□ 2.67
RTF1Q92541 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
RTF1Q92541 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
RTF1Q92541 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC31.7■■■□□ 2.67
RTF1Q92541 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.7■■■□□ 2.67
RTF1Q92541 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC31.7■■■□□ 2.66
RTF1Q92541 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
RTF1Q92541 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC31.7■■■□□ 2.66
RTF1Q92541 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
RTF1Q92541 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
RTF1Q92541 PVT1_1.1-201ENST00000615125 194 ntBASIC31.69■■■□□ 2.66
RTF1Q92541 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
RTF1Q92541 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC31.68■■■□□ 2.66
RTF1Q92541 KRT8P33-201ENST00000508125 1423 ntBASIC31.68■■■□□ 2.66
RTF1Q92541 AC087393.1-201ENST00000582896 145 ntBASIC31.68■■■□□ 2.66
RTF1Q92541 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.68■■■□□ 2.66
RTF1Q92541 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
RTF1Q92541 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
RTF1Q92541 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
RTF1Q92541 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
RTF1Q92541 RPS2P7-201ENST00000447334 885 ntBASIC31.67■■■□□ 2.66
RTF1Q92541 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.67■■■□□ 2.66
RTF1Q92541 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.67■■■□□ 2.66
RTF1Q92541 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
RTF1Q92541 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
RTF1Q92541 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
RTF1Q92541 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
RTF1Q92541 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
RTF1Q92541 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
RTF1Q92541 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
RTF1Q92541 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
RTF1Q92541 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
RTF1Q92541 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC31.64■■■□□ 2.66
RTF1Q92541 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
RTF1Q92541 KRT18P10-201ENST00000388836 1287 ntBASIC31.64■■■□□ 2.66
RTF1Q92541 MTX2-204ENST00000443241 799 ntTSL 3 BASIC31.64■■■□□ 2.66
RTF1Q92541 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC31.63■■■□□ 2.65
RTF1Q92541 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC31.63■■■□□ 2.65
RTF1Q92541 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
RTF1Q92541 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC31.63■■■□□ 2.65
RTF1Q92541 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
RTF1Q92541 IDNK-201ENST00000376417 511 ntTSL 5 BASIC31.62■■■□□ 2.65
RTF1Q92541 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
RTF1Q92541 YBX1P4-201ENST00000392794 808 ntBASIC31.62■■■□□ 2.65
RTF1Q92541 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC31.62■■■□□ 2.65
RTF1Q92541 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC31.62■■■□□ 2.65
RTF1Q92541 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
RTF1Q92541 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC31.61■■■□□ 2.65
RTF1Q92541 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
RTF1Q92541 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC31.61■■■□□ 2.65
RTF1Q92541 AC103834.1-201ENST00000520383 144 ntBASIC31.6■■■□□ 2.65
RTF1Q92541 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTF1Q92541 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTF1Q92541 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTF1Q92541 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTF1Q92541 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTF1Q92541 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTF1Q92541 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTF1Q92541 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTF1Q92541 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
RTF1Q92541 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC31.58■■■□□ 2.65
RTF1Q92541 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
RTF1Q92541 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC31.58■■■□□ 2.65
RTF1Q92541 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
RTF1Q92541 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC31.57■■■□□ 2.65
RTF1Q92541 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
RTF1Q92541 AC019171.1-201ENST00000601251 1056 ntBASIC31.57■■■□□ 2.64
RTF1Q92541 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC31.57■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms