Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
SLC44A3Q8N4M1 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
SLC44A3Q8N4M1 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC25.13■■□□□ 1.61
SLC44A3Q8N4M1 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SLC44A3Q8N4M1 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC25.13■■□□□ 1.61
SLC44A3Q8N4M1 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
SLC44A3Q8N4M1 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.13■■□□□ 1.61
SLC44A3Q8N4M1 UNC93B8-201ENST00000511903 705 ntBASIC25.12■■□□□ 1.61
SLC44A3Q8N4M1 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC25.12■■□□□ 1.61
SLC44A3Q8N4M1 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SLC44A3Q8N4M1 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.12■■□□□ 1.61
SLC44A3Q8N4M1 AC022616.5-201ENST00000518796 181 ntBASIC25.11■■□□□ 1.61
SLC44A3Q8N4M1 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC25.11■■□□□ 1.61
SLC44A3Q8N4M1 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SLC44A3Q8N4M1 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
SLC44A3Q8N4M1 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.61
SLC44A3Q8N4M1 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC25.1■■□□□ 1.61
SLC44A3Q8N4M1 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
SLC44A3Q8N4M1 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC25.1■■□□□ 1.61
SLC44A3Q8N4M1 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC25.1■■□□□ 1.61
SLC44A3Q8N4M1 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
SLC44A3Q8N4M1 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC25.09■■□□□ 1.61
SLC44A3Q8N4M1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC25.09■■□□□ 1.61
SLC44A3Q8N4M1 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SLC44A3Q8N4M1 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC25.09■■□□□ 1.61
SLC44A3Q8N4M1 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC25.09■■□□□ 1.61
SLC44A3Q8N4M1 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC25.09■■□□□ 1.61
SLC44A3Q8N4M1 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SLC44A3Q8N4M1 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
SLC44A3Q8N4M1 KRT16P3-201ENST00000439127 1283 ntBASIC25.07■■□□□ 1.6
SLC44A3Q8N4M1 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC25.07■■□□□ 1.6
SLC44A3Q8N4M1 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC25.07■■□□□ 1.6
SLC44A3Q8N4M1 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC25.07■■□□□ 1.6
SLC44A3Q8N4M1 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
SLC44A3Q8N4M1 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
SLC44A3Q8N4M1 KRT18P24-201ENST00000344739 1156 ntBASIC25.06■■□□□ 1.6
SLC44A3Q8N4M1 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
SLC44A3Q8N4M1 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SLC44A3Q8N4M1 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
SLC44A3Q8N4M1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC25.05■■□□□ 1.6
SLC44A3Q8N4M1 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SLC44A3Q8N4M1 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SLC44A3Q8N4M1 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
SLC44A3Q8N4M1 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
SLC44A3Q8N4M1 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC25.04■■□□□ 1.6
SLC44A3Q8N4M1 KRT18P10-201ENST00000388836 1287 ntBASIC25.04■■□□□ 1.6
SLC44A3Q8N4M1 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
SLC44A3Q8N4M1 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.04■■□□□ 1.6
SLC44A3Q8N4M1 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC25.03■■□□□ 1.6
SLC44A3Q8N4M1 MIR638-201ENST00000385237 100 ntBASIC25.03■■□□□ 1.6
SLC44A3Q8N4M1 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SLC44A3Q8N4M1 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
SLC44A3Q8N4M1 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC25.03■■□□□ 1.6
SLC44A3Q8N4M1 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SLC44A3Q8N4M1 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SLC44A3Q8N4M1 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SLC44A3Q8N4M1 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC25.02■■□□□ 1.6
SLC44A3Q8N4M1 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
SLC44A3Q8N4M1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SLC44A3Q8N4M1 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
SLC44A3Q8N4M1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
SLC44A3Q8N4M1 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
SLC44A3Q8N4M1 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
SLC44A3Q8N4M1 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC25■■□□□ 1.59
SLC44A3Q8N4M1 AC137630.3-201ENST00000607245 391 ntBASIC25■■□□□ 1.59
SLC44A3Q8N4M1 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC25■■□□□ 1.59
SLC44A3Q8N4M1 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC25■■□□□ 1.59
SLC44A3Q8N4M1 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC25■■□□□ 1.59
SLC44A3Q8N4M1 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC24.99■■□□□ 1.59
SLC44A3Q8N4M1 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
SLC44A3Q8N4M1 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC24.99■■□□□ 1.59
SLC44A3Q8N4M1 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
SLC44A3Q8N4M1 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.99■■□□□ 1.59
SLC44A3Q8N4M1 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC24.99■■□□□ 1.59
SLC44A3Q8N4M1 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SLC44A3Q8N4M1 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SLC44A3Q8N4M1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
SLC44A3Q8N4M1 TSPY9P-201ENST00000440215 945 ntBASIC24.98■■□□□ 1.59
SLC44A3Q8N4M1 TSPY11P-201ENST00000442607 1045 ntBASIC24.98■■□□□ 1.59
SLC44A3Q8N4M1 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
SLC44A3Q8N4M1 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC24.98■■□□□ 1.59
SLC44A3Q8N4M1 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC24.97■■□□□ 1.59
SLC44A3Q8N4M1 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SLC44A3Q8N4M1 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC24.97■■□□□ 1.59
SLC44A3Q8N4M1 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC24.97■■□□□ 1.59
SLC44A3Q8N4M1 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
SLC44A3Q8N4M1 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC24.97■■□□□ 1.59
SLC44A3Q8N4M1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SLC44A3Q8N4M1 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SLC44A3Q8N4M1 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SLC44A3Q8N4M1 AC021242.3-201ENST00000607598 1377 ntBASIC24.96■■□□□ 1.59
SLC44A3Q8N4M1 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SLC44A3Q8N4M1 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SLC44A3Q8N4M1 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SLC44A3Q8N4M1 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC24.96■■□□□ 1.59
SLC44A3Q8N4M1 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC24.95■■□□□ 1.59
SLC44A3Q8N4M1 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
SLC44A3Q8N4M1 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC24.95■■□□□ 1.58
SLC44A3Q8N4M1 AL139246.5-201ENST00000606645 996 ntBASIC24.95■■□□□ 1.58
SLC44A3Q8N4M1 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC24.94■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms