Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
RNF4P78317 AC004987.1-201ENST00000428627 508 ntBASIC22.46■■□□□ 1.19
RNF4P78317 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
RNF4P78317 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
RNF4P78317 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC22.46■■□□□ 1.19
RNF4P78317 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
RNF4P78317 ATP5G2P3-201ENST00000429083 425 ntBASIC22.45■■□□□ 1.18
RNF4P78317 DUX4L9-201ENST00000449051 1259 ntBASIC22.45■■□□□ 1.18
RNF4P78317 SPCS2P3-201ENST00000500401 656 ntBASIC22.45■■□□□ 1.18
RNF4P78317 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC22.45■■□□□ 1.18
RNF4P78317 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
RNF4P78317 TSPY13P-201ENST00000338964 914 ntBASIC22.44■■□□□ 1.18
RNF4P78317 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
RNF4P78317 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
RNF4P78317 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
RNF4P78317 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
RNF4P78317 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC22.43■■□□□ 1.18
RNF4P78317 AL033527.3-201ENST00000566366 1196 ntBASIC22.43■■□□□ 1.18
RNF4P78317 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC22.43■■□□□ 1.18
RNF4P78317 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
RNF4P78317 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
RNF4P78317 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
RNF4P78317 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC22.43■■□□□ 1.18
RNF4P78317 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.43■■□□□ 1.18
RNF4P78317 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
RNF4P78317 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.43■■□□□ 1.18
RNF4P78317 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
RNF4P78317 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF4P78317 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF4P78317 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC22.42■■□□□ 1.18
RNF4P78317 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF4P78317 AC018755.3-202ENST00000596210 929 ntBASIC22.41■■□□□ 1.18
RNF4P78317 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.41■■□□□ 1.18
RNF4P78317 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
RNF4P78317 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RNF4P78317 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RNF4P78317 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
RNF4P78317 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC22.4■■□□□ 1.18
RNF4P78317 DUX4L18-201ENST00000553347 1267 ntBASIC22.4■■□□□ 1.18
RNF4P78317 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
RNF4P78317 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
RNF4P78317 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
RNF4P78317 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.39■■□□□ 1.18
RNF4P78317 MIR6765-201ENST00000614092 87 ntBASIC22.39■■□□□ 1.17
RNF4P78317 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC22.39■■□□□ 1.17
RNF4P78317 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
RNF4P78317 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
RNF4P78317 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC22.38■■□□□ 1.17
RNF4P78317 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC22.38■■□□□ 1.17
RNF4P78317 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
RNF4P78317 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RNF4P78317 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RNF4P78317 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RNF4P78317 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC22.37■■□□□ 1.17
RNF4P78317 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC22.37■■□□□ 1.17
RNF4P78317 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC22.37■■□□□ 1.17
RNF4P78317 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
RNF4P78317 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RNF4P78317 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
RNF4P78317 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
RNF4P78317 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC22.36■■□□□ 1.17
RNF4P78317 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RNF4P78317 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
RNF4P78317 GUK1-208ENST00000366728 842 ntTSL 2 BASIC22.36■■□□□ 1.17
RNF4P78317 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
RNF4P78317 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC22.36■■□□□ 1.17
RNF4P78317 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC22.36■■□□□ 1.17
RNF4P78317 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
RNF4P78317 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC22.35■■□□□ 1.17
RNF4P78317 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RNF4P78317 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.35■■□□□ 1.17
RNF4P78317 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC22.35■■□□□ 1.17
RNF4P78317 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RNF4P78317 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
RNF4P78317 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC22.35■■□□□ 1.17
RNF4P78317 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC22.35■■□□□ 1.17
RNF4P78317 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
RNF4P78317 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
RNF4P78317 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RNF4P78317 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RNF4P78317 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RNF4P78317 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
RNF4P78317 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
RNF4P78317 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
RNF4P78317 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
RNF4P78317 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC22.34■■□□□ 1.17
RNF4P78317 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
RNF4P78317 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC22.33■■□□□ 1.17
RNF4P78317 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RNF4P78317 IDNK-203ENST00000405990 629 ntTSL 2 BASIC22.32■■□□□ 1.16
RNF4P78317 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RNF4P78317 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
RNF4P78317 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
RNF4P78317 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RNF4P78317 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RNF4P78317 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.32■■□□□ 1.16
RNF4P78317 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
RNF4P78317 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
RNF4P78317 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
RNF4P78317 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms