Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
NKX2-1P43699 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX2-1P43699 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX2-1P43699 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NKX2-1P43699 SUZ12P1-203ENST00000578195 985 ntBASIC19.68■□□□□ 0.74
NKX2-1P43699 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX2-1P43699 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC19.67■□□□□ 0.74
NKX2-1P43699 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX2-1P43699 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NKX2-1P43699 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX2-1P43699 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NKX2-1P43699 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX2-1P43699 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX2-1P43699 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX2-1P43699 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
NKX2-1P43699 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX2-1P43699 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX2-1P43699 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX2-1P43699 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NKX2-1P43699 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX2-1P43699 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC19.66■□□□□ 0.74
NKX2-1P43699 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
NKX2-1P43699 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC19.65■□□□□ 0.74
NKX2-1P43699 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-1P43699 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC19.65■□□□□ 0.74
NKX2-1P43699 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-1P43699 HNRNPLP2-201ENST00000568980 1570 ntBASIC19.65■□□□□ 0.74
NKX2-1P43699 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-1P43699 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC19.64■□□□□ 0.73
NKX2-1P43699 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-1P43699 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.64■□□□□ 0.73
NKX2-1P43699 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
NKX2-1P43699 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NKX2-1P43699 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX2-1P43699 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NKX2-1P43699 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
NKX2-1P43699 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX2-1P43699 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NKX2-1P43699 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NKX2-1P43699 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC19.62■□□□□ 0.73
NKX2-1P43699 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
NKX2-1P43699 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NKX2-1P43699 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC19.62■□□□□ 0.73
NKX2-1P43699 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX2-1P43699 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX2-1P43699 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC19.61■□□□□ 0.73
NKX2-1P43699 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX2-1P43699 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NKX2-1P43699 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NKX2-1P43699 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX2-1P43699 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
NKX2-1P43699 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX2-1P43699 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC19.6■□□□□ 0.73
NKX2-1P43699 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NKX2-1P43699 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NKX2-1P43699 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.6■□□□□ 0.73
NKX2-1P43699 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NKX2-1P43699 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-1P43699 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.59■□□□□ 0.73
NKX2-1P43699 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX2-1P43699 AC096887.2-201ENST00000623443 1957 ntBASIC19.59■□□□□ 0.73
NKX2-1P43699 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
NKX2-1P43699 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-1P43699 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC19.58■□□□□ 0.72
NKX2-1P43699 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-1P43699 AC133561.1-201ENST00000568600 2415 ntBASIC19.58■□□□□ 0.72
NKX2-1P43699 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
NKX2-1P43699 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-1P43699 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
NKX2-1P43699 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-1P43699 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-1P43699 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-1P43699 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.57■□□□□ 0.72
NKX2-1P43699 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-1P43699 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC19.57■□□□□ 0.72
NKX2-1P43699 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
NKX2-1P43699 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
NKX2-1P43699 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
NKX2-1P43699 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-1P43699 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-1P43699 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-1P43699 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NKX2-1P43699 LINC01124-201ENST00000409786 2117 ntBASIC19.55■□□□□ 0.72
NKX2-1P43699 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
NKX2-1P43699 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-1P43699 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-1P43699 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-1P43699 AC012676.1-201ENST00000574705 1949 ntBASIC19.55■□□□□ 0.72
NKX2-1P43699 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-1P43699 CIB2-204ENST00000557846 934 ntTSL 3 BASIC19.55■□□□□ 0.72
NKX2-1P43699 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NKX2-1P43699 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
NKX2-1P43699 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-1P43699 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NKX2-1P43699 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC19.55■□□□□ 0.72
NKX2-1P43699 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-1P43699 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-1P43699 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-1P43699 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NKX2-1P43699 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms