Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
COL1A1P02452 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC29.59■■■□□ 2.33
COL1A1P02452 MIR4508-201ENST00000584178 70 ntBASIC29.59■■■□□ 2.33
COL1A1P02452 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC29.58■■■□□ 2.33
COL1A1P02452 YBX1P4-201ENST00000392794 808 ntBASIC29.58■■■□□ 2.33
COL1A1P02452 AC103834.1-201ENST00000520383 144 ntBASIC29.58■■■□□ 2.33
COL1A1P02452 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC29.57■■■□□ 2.32
COL1A1P02452 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL1A1P02452 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC29.57■■■□□ 2.32
COL1A1P02452 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL1A1P02452 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC29.57■■■□□ 2.32
COL1A1P02452 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
COL1A1P02452 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC29.57■■■□□ 2.32
COL1A1P02452 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL1A1P02452 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL1A1P02452 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
COL1A1P02452 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC29.57■■■□□ 2.32
COL1A1P02452 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
COL1A1P02452 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC29.56■■■□□ 2.32
COL1A1P02452 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
COL1A1P02452 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC29.55■■■□□ 2.32
COL1A1P02452 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
COL1A1P02452 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
COL1A1P02452 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC29.55■■■□□ 2.32
COL1A1P02452 HES6-204ENST00000409182 863 ntTSL 2 BASIC29.55■■■□□ 2.32
COL1A1P02452 AC018755.3-202ENST00000596210 929 ntBASIC29.55■■■□□ 2.32
COL1A1P02452 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
COL1A1P02452 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
COL1A1P02452 AL592295.1-201ENST00000400984 884 ntBASIC29.54■■■□□ 2.32
COL1A1P02452 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL1A1P02452 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
COL1A1P02452 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC29.53■■■□□ 2.32
COL1A1P02452 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL1A1P02452 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.52■■■□□ 2.32
COL1A1P02452 GUSBP5-201ENST00000418136 578 ntBASIC29.52■■■□□ 2.32
COL1A1P02452 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC29.52■■■□□ 2.32
COL1A1P02452 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC29.52■■■□□ 2.32
COL1A1P02452 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL1A1P02452 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL1A1P02452 AP004609.3-201ENST00000610705 1884 ntBASIC29.5■■■□□ 2.31
COL1A1P02452 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL1A1P02452 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
COL1A1P02452 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
COL1A1P02452 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
COL1A1P02452 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
COL1A1P02452 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
COL1A1P02452 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
COL1A1P02452 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC29.48■■■□□ 2.31
COL1A1P02452 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
COL1A1P02452 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC29.48■■■□□ 2.31
COL1A1P02452 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC29.47■■■□□ 2.31
COL1A1P02452 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
COL1A1P02452 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
COL1A1P02452 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
COL1A1P02452 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC29.47■■■□□ 2.31
COL1A1P02452 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
COL1A1P02452 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC29.47■■■□□ 2.31
COL1A1P02452 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
COL1A1P02452 AC019069.1-201ENST00000610008 1333 ntBASIC29.46■■■□□ 2.31
COL1A1P02452 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
COL1A1P02452 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
COL1A1P02452 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
COL1A1P02452 OR2A1-AS1-204ENST00000470435 602 ntBASIC29.46■■■□□ 2.31
COL1A1P02452 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC29.46■■■□□ 2.31
COL1A1P02452 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC29.45■■■□□ 2.31
COL1A1P02452 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC29.45■■■□□ 2.31
COL1A1P02452 AC087393.1-201ENST00000582896 145 ntBASIC29.45■■■□□ 2.31
COL1A1P02452 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
COL1A1P02452 IDNK-201ENST00000376417 511 ntTSL 5 BASIC29.44■■■□□ 2.3
COL1A1P02452 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
COL1A1P02452 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC29.44■■■□□ 2.3
COL1A1P02452 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC29.44■■■□□ 2.3
COL1A1P02452 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
COL1A1P02452 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC29.43■■■□□ 2.3
COL1A1P02452 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
COL1A1P02452 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
COL1A1P02452 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC29.43■■■□□ 2.3
COL1A1P02452 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL1A1P02452 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
COL1A1P02452 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC29.42■■■□□ 2.3
COL1A1P02452 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC29.42■■■□□ 2.3
COL1A1P02452 AC131212.1-201ENST00000613771 668 ntBASIC29.42■■■□□ 2.3
COL1A1P02452 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC29.42■■■□□ 2.3
COL1A1P02452 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC29.42■■■□□ 2.3
COL1A1P02452 AC103724.3-201ENST00000564481 992 ntBASIC29.42■■■□□ 2.3
COL1A1P02452 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
COL1A1P02452 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC29.41■■■□□ 2.3
COL1A1P02452 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC29.41■■■□□ 2.3
COL1A1P02452 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
COL1A1P02452 RPS2P7-201ENST00000447334 885 ntBASIC29.41■■■□□ 2.3
COL1A1P02452 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
COL1A1P02452 PRTG-204ENST00000561292 833 ntTSL 3 BASIC29.39■■■□□ 2.3
COL1A1P02452 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC29.39■■■□□ 2.3
COL1A1P02452 MTX2-204ENST00000443241 799 ntTSL 3 BASIC29.38■■■□□ 2.29
COL1A1P02452 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC29.38■■■□□ 2.29
COL1A1P02452 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC29.38■■■□□ 2.29
COL1A1P02452 AL031848.2-201ENST00000607670 837 ntBASIC29.38■■■□□ 2.29
COL1A1P02452 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC29.38■■■□□ 2.29
COL1A1P02452 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
COL1A1P02452 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC29.38■■■□□ 2.29
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms