Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 TSPY13P-201ENST00000338964 914 ntBASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC32.48■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 CREM-210ENST00000374721 2020 ntTSL 5 BASIC32.48■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 HES4-204ENST00000484667 667 ntTSL 3 BASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 AC060814.1-201ENST00000554326 538 ntBASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 AC092803.2-201ENST00000564287 1899 ntBASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC32.46■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 HES4-202ENST00000428771 1040 ntTSL 2 BASIC32.45■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC32.45■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 AL157400.5-201ENST00000507624 621 ntBASIC32.45■■■□□ 2.79
SENP3-EIF4A1A0A087X0R7 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC32.45■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC32.44■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC32.43■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 AC022413.1-201ENST00000624602 984 ntBASIC32.42■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC32.42■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC32.41■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC32.41■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.41■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC32.4■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC32.4■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC32.4■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC32.39■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
SENP3-EIF4A1A0A087X0R7 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC32.38■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC32.37■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 GUK1-208ENST00000366728 842 ntTSL 2 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 U85056.1-201ENST00000616429 682 ntBASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC32.36■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 AC004987.1-201ENST00000428627 508 ntBASIC32.35■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC32.35■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 AC135731.1-201ENST00000569415 2548 ntBASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC32.33■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC32.33■■■□□ 2.77
SENP3-EIF4A1A0A087X0R7 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC32.32■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC32.31■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC32.31■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 ATP5G2P3-201ENST00000429083 425 ntBASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 AL451085.2-201ENST00000605085 799 ntBASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC32.3■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 AC145676.1-201ENST00000514988 2004 ntBASIC32.29■■■□□ 2.76
SENP3-EIF4A1A0A087X0R7 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC32.29■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms