Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 HNRNPRP1-201ENST00000453465 1695 ntBASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 AC004832.2-201ENST00000426397 482 ntBASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 AC007967.2-201ENST00000432613 625 ntBASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
CHMP4AQ9BY43 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 MTDHP5-201ENST00000598980 586 ntBASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 BOC-212ENST00000485230 2173 ntTSL 2 BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CHMP4AQ9BY43 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 PMP22-202ENST00000395936 816 ntTSL 3 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 AC124947.2-201ENST00000547118 1133 ntBASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CHMP4AQ9BY43 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
CHMP4AQ9BY43 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.1
CHMP4AQ9BY43 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
CHMP4AQ9BY43 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.1
CHMP4AQ9BY43 AL021920.2-201ENST00000624828 1351 ntBASIC21.89■■□□□ 1.1
CHMP4AQ9BY43 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 COX5A-206ENST00000568783 571 ntTSL 3 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 AC023141.13-201ENST00000604991 943 ntBASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CHMP4AQ9BY43 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms