Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC13.98□□□□□ -0.17
HMGB3O15347 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
HMGB3O15347 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HMGB3O15347 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HMGB3O15347 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC13.98□□□□□ -0.17
HMGB3O15347 OS9-205ENST00000413095 1660 ntTSL 2 BASIC13.98□□□□□ -0.17
HMGB3O15347 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HMGB3O15347 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
HMGB3O15347 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
HMGB3O15347 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.97□□□□□ -0.17
HMGB3O15347 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
HMGB3O15347 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
HMGB3O15347 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HMGB3O15347 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.97□□□□□ -0.17
HMGB3O15347 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC13.97□□□□□ -0.17
HMGB3O15347 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 KRT17P3-201ENST00000420566 1262 ntBASIC13.97□□□□□ -0.17
HMGB3O15347 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC13.97□□□□□ -0.17
HMGB3O15347 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC13.97□□□□□ -0.17
HMGB3O15347 UNC93B5-201ENST00000530315 699 ntBASIC13.97□□□□□ -0.17
HMGB3O15347 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC13.97□□□□□ -0.17
HMGB3O15347 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC13.97□□□□□ -0.17
HMGB3O15347 CILP-201ENST00000261883 5695 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.97□□□□□ -0.17
HMGB3O15347 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 AC132938.6-201ENST00000623828 1655 ntBASIC13.97□□□□□ -0.17
HMGB3O15347 TCF4-248ENST00000616053 8140 ntTSL 5 BASIC13.97□□□□□ -0.17
HMGB3O15347 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HMGB3O15347 AL024508.2-201ENST00000607749 1894 ntBASIC13.97□□□□□ -0.17
HMGB3O15347 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.97□□□□□ -0.17
HMGB3O15347 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HMGB3O15347 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC13.97□□□□□ -0.17
HMGB3O15347 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 AL603756.1-201ENST00000606511 2163 ntBASIC13.96□□□□□ -0.17
HMGB3O15347 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
HMGB3O15347 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.96□□□□□ -0.17
HMGB3O15347 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 KIRREL3-AS3-201ENST00000404882 831 ntBASIC13.96□□□□□ -0.17
HMGB3O15347 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC13.96□□□□□ -0.17
HMGB3O15347 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC13.96□□□□□ -0.17
HMGB3O15347 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
HMGB3O15347 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC13.96□□□□□ -0.17
HMGB3O15347 CR392000.1-201ENST00000624770 1228 ntBASIC13.96□□□□□ -0.17
HMGB3O15347 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms