Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 GAMT-205ENST00000640762 751 ntTSL 5 BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 AC022898.2-201ENST00000616822 1312 ntBASIC16.37■□□□□ 0.21
NR1H4Q96RI1 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
NR1H4Q96RI1 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 MTHFR-217ENST00000641820 1569 ntBASIC16.36■□□□□ 0.21
NR1H4Q96RI1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 AC008687.6-201ENST00000596318 630 ntBASIC16.36■□□□□ 0.21
NR1H4Q96RI1 AC133041.1-202ENST00000642053 222 ntBASIC16.36■□□□□ 0.21
NR1H4Q96RI1 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.36■□□□□ 0.21
NR1H4Q96RI1 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
NR1H4Q96RI1 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 AC116407.2-201ENST00000613639 860 ntBASIC16.35■□□□□ 0.21
NR1H4Q96RI1 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
NR1H4Q96RI1 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.34■□□□□ 0.21
NR1H4Q96RI1 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
NR1H4Q96RI1 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
NR1H4Q96RI1 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.34■□□□□ 0.21
NR1H4Q96RI1 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC16.34■□□□□ 0.21
NR1H4Q96RI1 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.34■□□□□ 0.21
NR1H4Q96RI1 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms