Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 TSPY12P-201ENST00000421279 868 ntBASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 TEN1-204ENST00000588202 862 ntTSL 3 BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
CCDC28BQ9BUN5 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 AC092053.1-201ENST00000605787 1936 ntBASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.96■□□□□ 0.3
CCDC28BQ9BUN5 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 LINC00554-201ENST00000564841 3011 ntBASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 DHDH-203ENST00000522614 776 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 AC124947.2-201ENST00000547118 1133 ntBASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 AC004263.2-201ENST00000617183 678 ntBASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
CCDC28BQ9BUN5 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 HMGA1P5-201ENST00000412453 271 ntBASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 AC096633.1-201ENST00000422446 749 ntBASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC28BQ9BUN5 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms