Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 KRT8P50-201ENST00000562022 1438 ntBASIC14.31□□□□□ -0.12
CDX1P47902 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC14.31□□□□□ -0.12
CDX1P47902 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC14.31□□□□□ -0.12
CDX1P47902 AC023824.1-201ENST00000562945 2975 ntBASIC14.31□□□□□ -0.12
CDX1P47902 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
CDX1P47902 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC14.3□□□□□ -0.12
CDX1P47902 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.3□□□□□ -0.12
CDX1P47902 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC14.3□□□□□ -0.12
CDX1P47902 AL023806.1-201ENST00000603994 1649 ntBASIC14.3□□□□□ -0.12
CDX1P47902 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC14.3□□□□□ -0.12
CDX1P47902 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CDX1P47902 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC14.3□□□□□ -0.12
CDX1P47902 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 MIR662-201ENST00000384847 95 ntBASIC14.3□□□□□ -0.12
CDX1P47902 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
CDX1P47902 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC14.3□□□□□ -0.12
CDX1P47902 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.3□□□□□ -0.12
CDX1P47902 NAA38-203ENST00000575071 553 ntTSL 2 BASIC14.3□□□□□ -0.12
CDX1P47902 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC14.3□□□□□ -0.12
CDX1P47902 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CDX1P47902 AC069148.1-201ENST00000608741 768 ntBASIC14.3□□□□□ -0.12
CDX1P47902 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC14.3□□□□□ -0.12
CDX1P47902 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
CDX1P47902 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.3□□□□□ -0.12
CDX1P47902 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.3□□□□□ -0.12
CDX1P47902 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CDX1P47902 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.3□□□□□ -0.12
CDX1P47902 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC14.3□□□□□ -0.12
CDX1P47902 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CDX1P47902 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC14.29□□□□□ -0.12
CDX1P47902 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC14.29□□□□□ -0.12
CDX1P47902 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC14.29□□□□□ -0.12
CDX1P47902 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.29□□□□□ -0.12
CDX1P47902 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CDX1P47902 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC14.29□□□□□ -0.12
CDX1P47902 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CDX1P47902 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC14.29□□□□□ -0.12
CDX1P47902 CNP-204ENST00000472031 1019 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.29□□□□□ -0.12
CDX1P47902 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CDX1P47902 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC14.29□□□□□ -0.12
CDX1P47902 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CDX1P47902 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.29□□□□□ -0.12
CDX1P47902 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 AC112777.1-201ENST00000540175 1423 ntBASIC14.29□□□□□ -0.12
CDX1P47902 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 PBK-203ENST00000522944 1499 ntTSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.29□□□□□ -0.12
CDX1P47902 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CDX1P47902 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms