Protein–RNA interactions for Protein: P37840

SNCA, Alpha-synuclein, humanhuman

Predictions only

Length 140 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNCAP37840 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
SNCAP37840 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
SNCAP37840 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SNCAP37840 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC14.4□□□□□ -0.1
SNCAP37840 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC14.4□□□□□ -0.1
SNCAP37840 RBM17P1-201ENST00000453646 1190 ntBASIC14.4□□□□□ -0.1
SNCAP37840 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC14.4□□□□□ -0.1
SNCAP37840 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
SNCAP37840 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
SNCAP37840 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 BANP-204ENST00000393208 2283 ntTSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC14.4□□□□□ -0.1
SNCAP37840 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
SNCAP37840 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.4□□□□□ -0.1
SNCAP37840 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
SNCAP37840 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.4□□□□□ -0.1
SNCAP37840 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC14.4□□□□□ -0.1
SNCAP37840 AC133963.1-201ENST00000504166 1679 ntBASIC14.39□□□□□ -0.11
SNCAP37840 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.39□□□□□ -0.11
SNCAP37840 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
SNCAP37840 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC14.39□□□□□ -0.11
SNCAP37840 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC14.39□□□□□ -0.11
SNCAP37840 DHDH-203ENST00000522614 776 ntTSL 5 BASIC14.39□□□□□ -0.11
SNCAP37840 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC14.39□□□□□ -0.11
SNCAP37840 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
SNCAP37840 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 AC092850.2-201ENST00000623821 2697 ntBASIC14.39□□□□□ -0.11
SNCAP37840 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC14.39□□□□□ -0.11
SNCAP37840 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
SNCAP37840 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 AC092338.2-201ENST00000568827 1415 ntBASIC14.39□□□□□ -0.11
SNCAP37840 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC14.39□□□□□ -0.11
SNCAP37840 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 AC022898.2-201ENST00000616822 1312 ntBASIC14.39□□□□□ -0.11
SNCAP37840 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC14.39□□□□□ -0.11
SNCAP37840 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
SNCAP37840 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SNCAP37840 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC14.38□□□□□ -0.11
SNCAP37840 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SNCAP37840 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.38□□□□□ -0.11
SNCAP37840 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
SNCAP37840 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SNCAP37840 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms