Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.587e-8■□□□□ 11
UPF1Q92900 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.327e-8■□□□□ 11
UPF1Q92900 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.062e-6■□□□□ 11
UPF1Q92900 CTCFL-201ENST00000243914 3567 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.462e-6■□□□□ 11
UPF1Q92900 CTCFL-202ENST00000371196 3491 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.562e-6■□□□□ 11
UPF1Q92900 CTCFL-207ENST00000429804 3864 ntTSL 1 (best) BASIC11.01□□□□□ -0.652e-6■□□□□ 11
UPF1Q92900 CTCFL-222ENST00000609232 3668 ntAPPRIS P3 TSL 1 (best) BASIC10.96□□□□□ -0.652e-6■□□□□ 11
UPF1Q92900 CTCFL-216ENST00000608263 4040 ntAPPRIS P3 TSL 1 (best) BASIC10.83□□□□□ -0.682e-6■□□□□ 11
UPF1Q92900 KLHL23-202ENST00000392647 4077 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.38e-7■□□□□ 11
UPF1Q92900 KLHL23-203ENST00000437875 895 ntTSL 310.51□□□□□ -0.738e-7■□□□□ 11
UPF1Q92900 KLHL23-204ENST00000448589 594 ntTSL 29.62□□□□□ -0.878e-7■□□□□ 11
UPF1Q92900 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.083e-6■□□□□ 11
UPF1Q92900 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.913e-8■□□□□ 11
UPF1Q92900 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.123e-8■□□□□ 11
UPF1Q92900 HNRNPK-201ENST00000351839 2652 ntAPPRIS ALT1 TSL 1 (best) BASIC10.44□□□□□ -0.743e-8■□□□□ 11
UPF1Q92900 HNRNPK-205ENST00000376281 2928 ntAPPRIS P4 TSL 1 (best) BASIC8.68□□□□□ -1.023e-8■□□□□ 11
UPF1Q92900 EGR1-201ENST00000239938 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.263e-7■□□□□ 11
UPF1Q92900 DNAJC6-202ENST00000371069 5365 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.51e-6■□□□□ 11
UPF1Q92900 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.171e-6■□□□□ 11
UPF1Q92900 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.97□□□□□ -1.291e-6■□□□□ 11
UPF1Q92900 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.25■□□□□ 0.671e-6■□□□□ 11
UPF1Q92900 SCARNA9-201ENST00000530422 353 ntBASIC11.7□□□□□ -0.543e-19■□□□□ 11
UPF1Q92900 CEP295-203ENST00000530425 1735 ntAPPRIS ALT2 TSL 45.77□□□□□ -1.493e-19■□□□□ 11
UPF1Q92900 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.523e-19■□□□□ 11
UPF1Q92900 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.6□□□□□ -1.673e-19■□□□□ 11
UPF1Q92900 MECP2-211ENST00000496908 342 ntTSL 1 (best)20.18■□□□□ 0.827e-7■□□□□ 11
UPF1Q92900 MECP2-202ENST00000369957 784 ntTSL 314.14□□□□□ -0.157e-7■□□□□ 11
UPF1Q92900 MECP2-212ENST00000611468 603 ntTSL 5 BASIC14.02□□□□□ -0.177e-7■□□□□ 11
UPF1Q92900 MECP2-220ENST00000631210 490 ntTSL 1 (best)10.84□□□□□ -0.677e-7■□□□□ 11
UPF1Q92900 MECP2-204ENST00000415944 413 ntTSL 510.76□□□□□ -0.697e-7■□□□□ 11
UPF1Q92900 ANO10-212ENST00000448045 583 ntTSL 39.68□□□□□ -0.867e-7■□□□□ 11
UPF1Q92900 MECP2-219ENST00000630151 322 ntTSL 57.31□□□□□ -1.247e-7■□□□□ 11
UPF1Q92900 MECP2-223ENST00000637791 101 ntTSL 55.27□□□□□ -1.577e-7■□□□□ 11
UPF1Q92900 MECP2-222ENST00000637533 140 ntTSL 52.27□□□□□ -2.057e-7■□□□□ 11
UPF1Q92900 KXD1-210ENST00000599000 498 ntTSL 2 BASIC16.61■□□□□ 0.253e-6■□□□□ 11
UPF1Q92900 KXD1-209ENST00000598830 932 ntTSL 2 BASIC15.11■□□□□ 0.013e-6■□□□□ 11
UPF1Q92900 UHMK1-201ENST00000282169 3345 ntTSL 210.14□□□□□ -0.793e-11■□□□□ 11
UPF1Q92900 KIAA0355-201ENST00000299505 6717 ntAPPRIS P1 TSL 1 (best) BASIC11.16□□□□□ -0.622e-7■□□□□ 10.9
UPF1Q92900 AC110285.7-201ENST00000624417 1536 ntBASIC33.59■■■□□ 2.972e-7■□□□□ 10.9
UPF1Q92900 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.332e-7■□□□□ 10.9
UPF1Q92900 PSMD11-201ENST00000261712 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.393e-8■□□□□ 10.9
UPF1Q92900 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.065e-12■□□□□ 10.9
UPF1Q92900 AP5Z1-205ENST00000490487 917 ntTSL 325.72■■□□□ 1.714e-7■□□□□ 10.9
UPF1Q92900 CNTROB-204ENST00000570782 752 ntTSL 223.21■■□□□ 1.318e-7■□□□□ 10.9
UPF1Q92900 MAX-210ENST00000555419 765 ntTSL 5 BASIC21.68■■□□□ 1.068e-7■□□□□ 10.9
UPF1Q92900 CNTROB-212ENST00000576538 784 ntTSL 520.06■□□□□ 0.88e-7■□□□□ 10.9
UPF1Q92900 ATG13-205ENST00000525850 562 ntTSL 419.34■□□□□ 0.698e-7■□□□□ 10.9
UPF1Q92900 AP5Z1-202ENST00000469614 2337 ntTSL 219.15■□□□□ 0.664e-7■□□□□ 10.9
UPF1Q92900 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.558e-7■□□□□ 10.9
UPF1Q92900 CNTROB-205ENST00000570784 695 ntTSL 316.65■□□□□ 0.268e-7■□□□□ 10.9
UPF1Q92900 AP5Z1-207ENST00000496303 5660 ntTSL 216.18■□□□□ 0.184e-7■□□□□ 10.9
UPF1Q92900 ATG13-209ENST00000527907 662 ntTSL 214.39□□□□□ -0.118e-7■□□□□ 10.9
UPF1Q92900 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.114e-7■□□□□ 10.9
UPF1Q92900 AP5Z1-204ENST00000477680 3081 ntTSL 214.32□□□□□ -0.124e-7■□□□□ 10.9
UPF1Q92900 ATG13-213ENST00000528984 587 ntTSL 412.47□□□□□ -0.418e-7■□□□□ 10.9
UPF1Q92900 PRRC2A-202ENST00000376033 6893 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.458e-7■□□□□ 10.9
UPF1Q92900 CNTROB-202ENST00000563694 3705 ntAPPRIS P3 TSL 1 (best) BASIC12.07□□□□□ -0.488e-7■□□□□ 10.9
UPF1Q92900 CNTROB-201ENST00000380262 3769 ntTSL 1 (best) BASIC11.68□□□□□ -0.548e-7■□□□□ 10.9
UPF1Q92900 ELP3-203ENST00000517975 680 ntTSL 311.03□□□□□ -0.643e-6■□□□□ 10.9
UPF1Q92900 ELP3-216ENST00000523687 1923 ntTSL 29.66□□□□□ -0.863e-6■□□□□ 10.9
UPF1Q92900 ATG13-212ENST00000528704 574 ntTSL 59.09□□□□□ -0.958e-7■□□□□ 10.9
UPF1Q92900 ELP3-205ENST00000519261 1924 ntTSL 28.6□□□□□ -1.033e-6■□□□□ 10.9
UPF1Q92900 YPEL5-210ENST00000495673 935 ntTSL 1 (best)14.65□□□□□ -0.064e-6■□□□□ 10.9
UPF1Q92900 RHOBTB3-203ENST00000503737 653 ntTSL 310.45□□□□□ -0.741e-11■□□□□ 10.9
UPF1Q92900 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC27.84■■■□□ 2.055e-8■□□□□ 10.9
UPF1Q92900 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC27.28■■□□□ 1.962e-6■□□□□ 10.9
UPF1Q92900 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC26.69■■□□□ 1.865e-8■□□□□ 10.9
UPF1Q92900 SPPL2B-213ENST00000621568 1017 ntTSL 524.75■■□□□ 1.555e-8■□□□□ 10.9
UPF1Q92900 SPPL2B-208ENST00000612623 495 ntTSL 524.46■■□□□ 1.515e-8■□□□□ 10.9
UPF1Q92900 FANCA-221ENST00000566889 2201 ntTSL 1 (best)23.36■■□□□ 1.335e-8■□□□□ 10.9
UPF1Q92900 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC22.54■■□□□ 1.25e-8■□□□□ 10.9
UPF1Q92900 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC22.2■■□□□ 1.155e-8■□□□□ 10.9
UPF1Q92900 FANCA-220ENST00000566409 395 ntTSL 1 (best)21.08■□□□□ 0.975e-8■□□□□ 10.9
UPF1Q92900 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC20.8■□□□□ 0.925e-8■□□□□ 10.9
UPF1Q92900 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.68■□□□□ 0.95e-8■□□□□ 10.9
UPF1Q92900 DNASE2-203ENST00000588777 727 ntTSL 220.29■□□□□ 0.845e-8■□□□□ 10.9
UPF1Q92900 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.565e-8■□□□□ 10.9
UPF1Q92900 TPD52L1-204ENST00000392482 1165 ntTSL 2 BASIC16.25■□□□□ 0.195e-8■□□□□ 10.9
UPF1Q92900 HIST1H2BJ-203ENST00000607124 950 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.182e-21■□□□□ 10.9
UPF1Q92900 FANCA-225ENST00000567621 618 ntTSL 313.68□□□□□ -0.225e-8■□□□□ 10.9
UPF1Q92900 OSTC-204ENST00000512478 663 ntTSL 5 BASIC13.11□□□□□ -0.315e-8■□□□□ 10.9
UPF1Q92900 TPD52L1-216ENST00000571678 2486 nt12.51□□□□□ -0.415e-8■□□□□ 10.9
UPF1Q92900 FANCA-202ENST00000389301 5451 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.465e-8■□□□□ 10.9
UPF1Q92900 HIST1H2BJ-202ENST00000606923 408 ntTSL 310.76□□□□□ -0.692e-21■□□□□ 10.9
UPF1Q92900 FANCA-230ENST00000568369 4601 ntAPPRIS ALT2 TSL 2 BASIC10.49□□□□□ -0.735e-8■□□□□ 10.9
UPF1Q92900 AC092718.4-201ENST00000566639 716 ntBASIC8.9□□□□□ -0.985e-8■□□□□ 10.9
UPF1Q92900 PTP4A2-217ENST00000602683 667 ntTSL 214.87□□□□□ -0.038e-17■□□□□ 10.9
UPF1Q92900 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC6.77□□□□□ -1.338e-17■□□□□ 10.9
UPF1Q92900 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.827e-8■□□□□ 10.9
UPF1Q92900 TMBIM1-210ENST00000439306 631 ntTSL 516.52■□□□□ 0.241e-8■□□□□ 10.9
UPF1Q92900 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.686e-8■□□□□ 10.8
UPF1Q92900 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC14.04□□□□□ -0.166e-8■□□□□ 10.8
UPF1Q92900 MTUS1-205ENST00000517413 4303 ntTSL 28.05□□□□□ -1.126e-8■□□□□ 10.8
UPF1Q92900 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6.81□□□□□ -1.326e-8■□□□□ 10.8
UPF1Q92900 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC6.74□□□□□ -1.336e-8■□□□□ 10.8
UPF1Q92900 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC5.93□□□□□ -1.466e-8■□□□□ 10.8
UPF1Q92900 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.33□□□□□ -1.566e-8■□□□□ 10.8
UPF1Q92900 MTUS1-217ENST00000520196 5205 ntTSL 1 (best)4.97□□□□□ -1.616e-8■□□□□ 10.8
UPF1Q92900 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.221e-7■□□□□ 10.8
UPF1Q92900 THAP7-206ENST00000476667 1671 ntTSL 525.52■■□□□ 1.681e-7■□□□□ 10.8
Retrieved 100 of 15,879 protein–RNA pairs in 79.8 ms