Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.56e-6■□□□□ 9
DDX55Q8NHQ9 HLA-B-255ENST00000498007 1087 nt23.82■■□□□ 1.46e-6■□□□□ 9
DDX55Q8NHQ9 PLXNB1-217ENST00000484485 560 ntTSL 422.34■■□□□ 1.174e-11■□□□□ 9
DDX55Q8NHQ9 ESPN-217ENST00000636644 544 ntTSL 522.28■■□□□ 1.166e-6■□□□□ 9
DDX55Q8NHQ9 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC22.13■■□□□ 1.136e-6■□□□□ 9
DDX55Q8NHQ9 PCK2-215ENST00000561050 1856 ntTSL 222.08■■□□□ 1.136e-6■□□□□ 9
DDX55Q8NHQ9 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.048e-11■□□□□ 9
DDX55Q8NHQ9 SLC29A4-204ENST00000434816 623 ntTSL 221.43■■□□□ 1.026e-6■□□□□ 9
DDX55Q8NHQ9 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.986e-6■□□□□ 9
DDX55Q8NHQ9 CCS-204ENST00000526066 872 ntTSL 221.02■□□□□ 0.966e-6■□□□□ 9
DDX55Q8NHQ9 CCS-203ENST00000526058 593 ntTSL 420.85■□□□□ 0.936e-6■□□□□ 9
DDX55Q8NHQ9 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.936e-6■□□□□ 9
DDX55Q8NHQ9 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.7■□□□□ 0.96e-6■□□□□ 9
DDX55Q8NHQ9 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.64■□□□□ 0.896e-6■□□□□ 9
DDX55Q8NHQ9 PCK2-211ENST00000559837 756 ntTSL 320.43■□□□□ 0.866e-6■□□□□ 9
DDX55Q8NHQ9 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC20.11■□□□□ 0.816e-6■□□□□ 9
DDX55Q8NHQ9 GGA2-208ENST00000566685 571 ntTSL 419.89■□□□□ 0.776e-6■□□□□ 9
DDX55Q8NHQ9 CXXC1-209ENST00000587342 802 ntTSL 219.89■□□□□ 0.776e-6■□□□□ 9
DDX55Q8NHQ9 SPC24-207ENST00000592967 833 ntTSL 319.78■□□□□ 0.764e-14■□□□□ 9
DDX55Q8NHQ9 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.726e-6■□□□□ 9
DDX55Q8NHQ9 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC19.48■□□□□ 0.716e-6■□□□□ 9
DDX55Q8NHQ9 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.686e-7■□□□□ 9
DDX55Q8NHQ9 PCK2-206ENST00000558674 2189 ntTSL 219.27■□□□□ 0.686e-6■□□□□ 9
DDX55Q8NHQ9 SPC24-203ENST00000585567 633 ntTSL 319.09■□□□□ 0.654e-14■□□□□ 9
DDX55Q8NHQ9 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.82■□□□□ 0.66e-6■□□□□ 9
DDX55Q8NHQ9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.584e-14■□□□□ 9
DDX55Q8NHQ9 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.556e-6■□□□□ 9
DDX55Q8NHQ9 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC18.42■□□□□ 0.546e-6■□□□□ 9
DDX55Q8NHQ9 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.38■□□□□ 0.536e-6■□□□□ 9
DDX55Q8NHQ9 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.496e-6■□□□□ 9
DDX55Q8NHQ9 LYPLA2-207ENST00000421070 429 ntTSL 518.08■□□□□ 0.486e-6■□□□□ 9
DDX55Q8NHQ9 CSNK2A1-209ENST00000609606 589 ntTSL 218.01■□□□□ 0.476e-6■□□□□ 9
DDX55Q8NHQ9 CSNK2A1-205ENST00000460062 552 ntTSL 418.01■□□□□ 0.476e-6■□□□□ 9
DDX55Q8NHQ9 SPC24-205ENST00000591396 832 ntTSL 517.88■□□□□ 0.454e-14■□□□□ 9
DDX55Q8NHQ9 LYPLA2-206ENST00000420982 614 ntTSL 317.39■□□□□ 0.376e-6■□□□□ 9
DDX55Q8NHQ9 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC17.13■□□□□ 0.336e-6■□□□□ 9
DDX55Q8NHQ9 KLC4-219ENST00000486439 756 ntTSL 217.07■□□□□ 0.326e-6■□□□□ 9
DDX55Q8NHQ9 LYPLA2-209ENST00000492577 717 ntTSL 316.62■□□□□ 0.256e-6■□□□□ 9
DDX55Q8NHQ9 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC16.49■□□□□ 0.236e-6■□□□□ 9
DDX55Q8NHQ9 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.28e-11■□□□□ 9
DDX55Q8NHQ9 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.26e-6■□□□□ 9
DDX55Q8NHQ9 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.198e-11■□□□□ 9
DDX55Q8NHQ9 SMAD3-213ENST00000560175 542 ntTSL 416.2■□□□□ 0.186e-6■□□□□ 9
DDX55Q8NHQ9 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.166e-6■□□□□ 9
DDX55Q8NHQ9 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC15.97■□□□□ 0.156e-6■□□□□ 9
DDX55Q8NHQ9 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.97■□□□□ 0.156e-6■□□□□ 9
DDX55Q8NHQ9 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.146e-6■□□□□ 9
DDX55Q8NHQ9 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC15.73■□□□□ 0.116e-6■□□□□ 9
DDX55Q8NHQ9 ERGIC3-209ENST00000447986 1632 ntTSL 1 (best)15.68■□□□□ 0.14e-11■□□□□ 9
DDX55Q8NHQ9 SEMA4G-208ENST00000518948 376 ntTSL 315.66■□□□□ 0.16e-6■□□□□ 9
DDX55Q8NHQ9 HLA-B-251ENST00000463574 588 nt15.47■□□□□ 0.076e-6■□□□□ 9
DDX55Q8NHQ9 SMAD3-208ENST00000558827 552 ntTSL 415.39■□□□□ 0.056e-6■□□□□ 9
DDX55Q8NHQ9 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC15.38■□□□□ 0.056e-6■□□□□ 9
DDX55Q8NHQ9 CTIF-208ENST00000590422 412 ntTSL 315.19■□□□□ 0.026e-6■□□□□ 9
DDX55Q8NHQ9 PSMC5-219ENST00000584880 597 ntTSL 315.07■□□□□ 06e-6■□□□□ 9
DDX55Q8NHQ9 RNF40-211ENST00000567365 597 ntTSL 315.02■□□□□ -06e-6■□□□□ 9
DDX55Q8NHQ9 SMAD3-205ENST00000558428 554 ntTSL 414.92□□□□□ -0.026e-6■□□□□ 9
DDX55Q8NHQ9 ESYT1-204ENST00000548142 563 ntTSL 314.91□□□□□ -0.026e-6■□□□□ 9
DDX55Q8NHQ9 IL1RN-204ENST00000409052 1903 ntTSL 5 BASIC14.84□□□□□ -0.036e-6■□□□□ 9
DDX55Q8NHQ9 ERGIC3-211ENST00000461043 728 ntTSL 214.64□□□□□ -0.074e-11■□□□□ 9
DDX55Q8NHQ9 ERGIC3-205ENST00000413587 977 ntTSL 514.61□□□□□ -0.074e-11■□□□□ 9
DDX55Q8NHQ9 SLCO2B1-212ENST00000530015 5875 ntTSL 214.58□□□□□ -0.086e-6■□□□□ 9
DDX55Q8NHQ9 ESYT1-207ENST00000550878 646 ntTSL 514.51□□□□□ -0.096e-6■□□□□ 9
DDX55Q8NHQ9 SMAD3-204ENST00000540846 1567 ntTSL 1 (best) BASIC14.49□□□□□ -0.096e-6■□□□□ 9
DDX55Q8NHQ9 VPS4A-204ENST00000566354 2329 ntTSL 1 (best)14.47□□□□□ -0.096e-6■□□□□ 9
DDX55Q8NHQ9 GGA2-213ENST00000568922 1807 ntTSL 214.46□□□□□ -0.096e-6■□□□□ 9
DDX55Q8NHQ9 PSMC5-205ENST00000579147 2586 ntTSL 214.36□□□□□ -0.116e-6■□□□□ 9
DDX55Q8NHQ9 GSTK1-203ENST00000436038 556 ntTSL 513.76□□□□□ -0.216e-6■□□□□ 9
DDX55Q8NHQ9 SLCO2B1-202ENST00000341411 2874 nt13.62□□□□□ -0.236e-6■□□□□ 9
DDX55Q8NHQ9 INPP5D-204ENST00000445964 4845 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.246e-6■□□□□ 9
DDX55Q8NHQ9 IST1-213ENST00000538565 1245 ntTSL 213.5□□□□□ -0.256e-6■□□□□ 9
DDX55Q8NHQ9 BRD2-218ENST00000606059 565 ntTSL 213.26□□□□□ -0.296e-6■□□□□ 9
DDX55Q8NHQ9 SZRD1-201ENST00000401088 3636 ntAPPRIS P3 TSL 1 (best) BASIC13.22□□□□□ -0.296e-6■□□□□ 9
DDX55Q8NHQ9 PLXNB1-203ENST00000449094 3863 ntTSL 213.08□□□□□ -0.324e-11■□□□□ 9
DDX55Q8NHQ9 SMAD3-202ENST00000439724 1530 ntTSL 1 (best) BASIC13.05□□□□□ -0.326e-6■□□□□ 9
DDX55Q8NHQ9 BRD2-208ENST00000464592 1590 ntTSL 513.03□□□□□ -0.326e-6■□□□□ 9
DDX55Q8NHQ9 ERGIC3-219ENST00000496172 781 ntTSL 212.83□□□□□ -0.364e-11■□□□□ 9
DDX55Q8NHQ9 VPS4A-201ENST00000254950 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.386e-6■□□□□ 9
DDX55Q8NHQ9 PCK2-209ENST00000559503 826 ntTSL 512.64□□□□□ -0.396e-6■□□□□ 9
DDX55Q8NHQ9 SLCO2B1-204ENST00000454962 3219 ntTSL 2 BASIC12.51□□□□□ -0.416e-6■□□□□ 9
DDX55Q8NHQ9 CES2-202ENST00000417689 3868 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.426e-6■□□□□ 9
DDX55Q8NHQ9 CEPT1-209ENST00000498239 1957 ntTSL 1 (best)12.39□□□□□ -0.436e-6■□□□□ 9
DDX55Q8NHQ9 PPP6R3-204ENST00000393801 5069 ntTSL 1 (best) BASIC12.36□□□□□ -0.436e-6■□□□□ 9
DDX55Q8NHQ9 CEPT1-201ENST00000357172 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.456e-6■□□□□ 9
DDX55Q8NHQ9 CES2-211ENST00000568470 3391 ntTSL 212.17□□□□□ -0.466e-6■□□□□ 9
DDX55Q8NHQ9 INPP5D-202ENST00000415617 3628 ntTSL 512.15□□□□□ -0.476e-6■□□□□ 9
DDX55Q8NHQ9 CEPT1-210ENST00000545121 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.516e-6■□□□□ 9
DDX55Q8NHQ9 CES2-205ENST00000563988 371 ntTSL 211.83□□□□□ -0.526e-6■□□□□ 9
DDX55Q8NHQ9 GGA2-210ENST00000567339 293 ntTSL 311.82□□□□□ -0.526e-6■□□□□ 9
DDX55Q8NHQ9 GGA2-201ENST00000309859 5973 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.526e-6■□□□□ 9
DDX55Q8NHQ9 ESPN-208ENST00000475479 360 ntTSL 311.81□□□□□ -0.526e-6■□□□□ 9
DDX55Q8NHQ9 PPP6R3-201ENST00000265636 4794 ntTSL 1 (best) BASIC11.61□□□□□ -0.556e-6■□□□□ 9
DDX55Q8NHQ9 CES2-201ENST00000317091 3927 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.566e-6■□□□□ 9
DDX55Q8NHQ9 PPP6R3-203ENST00000393800 5093 ntAPPRIS P4 TSL 1 (best) BASIC11.5□□□□□ -0.576e-6■□□□□ 9
DDX55Q8NHQ9 SMAD3-203ENST00000537194 1147 ntTSL 1 (best) BASIC11.18□□□□□ -0.626e-6■□□□□ 9
DDX55Q8NHQ9 PSMC5-221ENST00000585242 1178 ntTSL 511.09□□□□□ -0.636e-6■□□□□ 9
DDX55Q8NHQ9 SLCO2B1-201ENST00000289575 4494 ntAPPRIS P3 TSL 1 (best) BASIC11.05□□□□□ -0.646e-6■□□□□ 9
DDX55Q8NHQ9 HLA-B-257ENST00000640094 147 ntBASIC11.03□□□□□ -0.646e-6■□□□□ 9
DDX55Q8NHQ9 PPP6R3-202ENST00000265637 4783 ntTSL 5 BASIC10.8□□□□□ -0.686e-6■□□□□ 9
DDX55Q8NHQ9 PPP6R3-214ENST00000527403 4862 ntTSL 5 BASIC10.7□□□□□ -0.76e-6■□□□□ 9
Retrieved 100 of 15,504 protein–RNA pairs in 88.8 ms