RNA–Protein interactions for RNA: ENST00000461043.6

ERGIC3-211, Transcript of ERGIC and golgi 3, humanhuman

TSL 2

Gene ERGIC3, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC3-211ENST00000461043 NISCHQ9Y2I1 1504 aa29.45■■■□□ 2.31
ERGIC3-211ENST00000461043 CCDC180Q9P1Z9 1646 aa26.13■■□□□ 1.77
ERGIC3-211ENST00000461043 ABCC9O60706 1549 aa25.38■■□□□ 1.65
ERGIC3-211ENST00000461043 ZCCHC6Q5VYS8 1495 aaKnown RBP24.58■■□□□ 1.53
ERGIC3-211ENST00000461043 NACADO15069 1562 aa24.53■■□□□ 1.52
ERGIC3-211ENST00000461043 RB1CC1Q8TDY2 1594 aa24.5■■□□□ 1.51
ERGIC3-211ENST00000461043 MYO15BQ96JP2 1530 aa24.48■■□□□ 1.51
ERGIC3-211ENST00000461043 DCAF1Q9Y4B6 1507 aa24.42■■□□□ 1.5
ERGIC3-211ENST00000461043 DCAF8L2P0C7V8 631 aa24.38■■□□□ 1.49
ERGIC3-211ENST00000461043 UNC13AQ9UPW8 1703 aa23.95■■□□□ 1.42
ERGIC3-211ENST00000461043 BICRAQ9NZM4 1560 aa23.82■■□□□ 1.4
ERGIC3-211ENST00000461043 SCRIBQ14160 1630 aa23.81■■□□□ 1.4
ERGIC3-211ENST00000461043 PABPN1Q86U42 306 aaKnown RBP eCLIP23.73■■□□□ 1.39
ERGIC3-211ENST00000461043 SHROOM4Q9ULL8 1493 aa23.59■■□□□ 1.37
ERGIC3-211ENST00000461043 DNAJC5BQ9UF47 199 aa23.23■■□□□ 1.31
ERGIC3-211ENST00000461043 EIF4G1Q04637 1599 aaKnown RBP23.14■■□□□ 1.3
ERGIC3-211ENST00000461043 CC2D2AQ9P2K1 1620 aa23■■□□□ 1.27
ERGIC3-211ENST00000461043 CECR2Q9BXF3 1484 aa22.92■■□□□ 1.26
ERGIC3-211ENST00000461043 SMARCA4P51532 1647 aa22.82■■□□□ 1.24
ERGIC3-211ENST00000461043 BAZ1AQ9NRL2 1556 aaPredicted RBP22.8■■□□□ 1.24
ERGIC3-211ENST00000461043 MROH2BQ7Z745 1585 aa22.69■■□□□ 1.22
ERGIC3-211ENST00000461043 ATAD2BQ9ULI0 1458 aa22.67■■□□□ 1.22
ERGIC3-211ENST00000461043 NCAPD3P42695 1498 aa22.66■■□□□ 1.22
ERGIC3-211ENST00000461043 PEG3Q9GZU2 1588 aa22.64■■□□□ 1.22
ERGIC3-211ENST00000461043 SMARCA2P51531 1590 aa22.63■■□□□ 1.21
ERGIC3-211ENST00000461043 HMGXB3Q12766 1538 aa22.55■■□□□ 1.2
ERGIC3-211ENST00000461043 RSF1Q96T23 1441 aaPredicted RBP22.48■■□□□ 1.19
ERGIC3-211ENST00000461043 BAZ1BQ9UIG0 1483 aaKnown RBP22.46■■□□□ 1.19
ERGIC3-211ENST00000461043 WIZO95785 1651 aa22.42■■□□□ 1.18
ERGIC3-211ENST00000461043 TOP2AP11388 1531 aaKnown RBP22.23■■□□□ 1.15
ERGIC3-211ENST00000461043 NESP48681 1621 aa22.03■■□□□ 1.12
ERGIC3-211ENST00000461043 LAMC3Q9Y6N6 1575 aa22■■□□□ 1.11
ERGIC3-211ENST00000461043 CADPSQ9ULU8 1353 aa21.97■■□□□ 1.11
ERGIC3-211ENST00000461043 CCDC88BA6NC98 1476 aa21.96■■□□□ 1.11
ERGIC3-211ENST00000461043 CFTRP13569 1480 aa21.9■■□□□ 1.1
ERGIC3-211ENST00000461043 SUPT5HO00267 1087 aaKnown RBP21.88■■□□□ 1.09
ERGIC3-211ENST00000461043 ERCC6Q03468 1493 aa21.84■■□□□ 1.09
ERGIC3-211ENST00000461043 PDS5BQ9NTI5 1447 aa21.84■■□□□ 1.09
ERGIC3-211ENST00000461043 KIF21AQ7Z4S6 1674 aa21.76■■□□□ 1.07
ERGIC3-211ENST00000461043 FANCD2Q9BXW9 1451 aa21.71■■□□□ 1.07
ERGIC3-211ENST00000461043 THOC2Q8NI27 1593 aaKnown RBP21.7■■□□□ 1.06
ERGIC3-211ENST00000461043 PRDM2Q13029 1718 aa21.69■■□□□ 1.06
ERGIC3-211ENST00000461043 CEP164Q9UPV0 1460 aa21.66■■□□□ 1.06
ERGIC3-211ENST00000461043 CUX2O14529 1486 aa21.64■■□□□ 1.05
ERGIC3-211ENST00000461043 MRC2Q9UBG0 1479 aa21.62■■□□□ 1.05
ERGIC3-211ENST00000461043 WDR62O43379 1518 aa21.58■■□□□ 1.04
ERGIC3-211ENST00000461043 URB2Q14146 1524 aaKnown RBP21.51■■□□□ 1.03
ERGIC3-211ENST00000461043 TOPBP1Q92547 1522 aa21.39■■□□□ 1.01
ERGIC3-211ENST00000461043 ABCC8Q09428 1581 aa21.38■■□□□ 1.01
ERGIC3-211ENST00000461043 DNMBPQ6XZF7 1577 aa21.37■■□□□ 1.01
ERGIC3-211ENST00000461043 CUX1P39880 1505 aa21.29■■□□□ 1
ERGIC3-211ENST00000461043 POLA1P09884 1462 aaPredicted RBP21.22■□□□□ 0.99
ERGIC3-211ENST00000461043 IFT140Q96RY7 1462 aa21.21■□□□□ 0.99
ERGIC3-211ENST00000461043 FGD5Q6ZNL6 1462 aa21.17■□□□□ 0.98
ERGIC3-211ENST00000461043 TARBP1Q13395 1621 aaKnown RBP21.17■□□□□ 0.98
ERGIC3-211ENST00000461043 WRNQ14191 1432 aaPredicted RBP eCLIP21.16■□□□□ 0.98
ERGIC3-211ENST00000461043 SYNJ1O43426 1573 aa21.14■□□□□ 0.97
ERGIC3-211ENST00000461043 TOP2BQ02880 1626 aa21.13■□□□□ 0.97
ERGIC3-211ENST00000461043 BIVM-ERCC5R4GMW8 1640 aa21.13■□□□□ 0.97
ERGIC3-211ENST00000461043 ZNF608Q9ULD9 1512 aaPredicted RBP21.12■□□□□ 0.97
ERGIC3-211ENST00000461043 RAD54L2Q9Y4B4 1467 aa21.11■□□□□ 0.97
ERGIC3-211ENST00000461043 SOGA1O94964 1423 aa21.1■□□□□ 0.97
ERGIC3-211ENST00000461043 EIF4G3O43432 1585 aaKnown RBP21.04■□□□□ 0.96
ERGIC3-211ENST00000461043 WDR97A6NE52 1622 aa21.02■□□□□ 0.96
ERGIC3-211ENST00000461043 ABCA10Q8WWZ4 1543 aa20.99■□□□□ 0.95
ERGIC3-211ENST00000461043 AQRO60306 1485 aaKnown RBP eCLIP20.99■□□□□ 0.953e-8■■■■□ 19.7
ERGIC3-211ENST00000461043 TDRD9Q8NDG6 1382 aaKnown RBP20.97■□□□□ 0.95
ERGIC3-211ENST00000461043 ABCA5Q8WWZ7 1642 aa20.91■□□□□ 0.94
ERGIC3-211ENST00000461043 GAPVD1Q14C86 1478 aa20.87■□□□□ 0.93
ERGIC3-211ENST00000461043 GRIN2BQ13224 1484 aa20.86■□□□□ 0.93
ERGIC3-211ENST00000461043 SNAPC4Q5SXM2 1469 aa20.81■□□□□ 0.92
ERGIC3-211ENST00000461043 PBRM1Q86U86 1689 aa20.8■□□□□ 0.92
ERGIC3-211ENST00000461043 DNAJC5Q9H3Z4 198 aa20.8■□□□□ 0.92
ERGIC3-211ENST00000461043 MAGI1Q96QZ7 1491 aaPredicted RBP20.8■□□□□ 0.92
ERGIC3-211ENST00000461043 ERICH3Q5RHP9 1530 aa20.74■□□□□ 0.91
ERGIC3-211ENST00000461043 SYNJ2O15056 1496 aa20.71■□□□□ 0.91
ERGIC3-211ENST00000461043 CHD1O14646 1710 aa20.71■□□□□ 0.91
ERGIC3-211ENST00000461043 KIF27Q86VH2 1401 aa20.7■□□□□ 0.9
ERGIC3-211ENST00000461043 OSCARQ8IYS5 282 aa20.7■□□□□ 0.9
ERGIC3-211ENST00000461043 ADAMTS12P58397 1594 aa20.69■□□□□ 0.9
ERGIC3-211ENST00000461043 TRIM41Q8WV44 630 aa20.68■□□□□ 0.9
ERGIC3-211ENST00000461043 FHAD1B1AJZ9 1412 aa20.64■□□□□ 0.89
ERGIC3-211ENST00000461043 IGF1RP08069 1367 aa20.64■□□□□ 0.89
ERGIC3-211ENST00000461043 FBLN2P98095 1184 aa20.62■□□□□ 0.89
ERGIC3-211ENST00000461043 CHMP7Q8WUX9 453 aaPredicted RBP20.62■□□□□ 0.89
ERGIC3-211ENST00000461043 GRIN2AQ12879 1464 aa20.6■□□□□ 0.89
ERGIC3-211ENST00000461043 RUSC2Q8N2Y8 1516 aa20.58■□□□□ 0.88
ERGIC3-211ENST00000461043 CHIC1Q5VXU3 224 aa20.56■□□□□ 0.88
ERGIC3-211ENST00000461043 CUL7Q14999 1698 aa20.56■□□□□ 0.88
ERGIC3-211ENST00000461043 CLASP1Q7Z460 1538 aa20.56■□□□□ 0.88
ERGIC3-211ENST00000461043 NUP160Q12769 1436 aa20.53■□□□□ 0.88
ERGIC3-211ENST00000461043 CEP170Q5SW79 1584 aa20.5■□□□□ 0.87
ERGIC3-211ENST00000461043 CARMIL1Q5VZK9 1371 aa20.48■□□□□ 0.87
ERGIC3-211ENST00000461043 ARHGEF11O15085 1522 aa20.42■□□□□ 0.86
ERGIC3-211ENST00000461043 RIMBP3CA6NJZ7 1639 aa20.4■□□□□ 0.86
ERGIC3-211ENST00000461043 RIMBP3BA6NNM3 1639 aa20.4■□□□□ 0.86
ERGIC3-211ENST00000461043 EEA1Q15075 1411 aa20.4■□□□□ 0.86
ERGIC3-211ENST00000461043 RIMBP3Q9UFD9 1639 aa20.4■□□□□ 0.86
ERGIC3-211ENST00000461043 PRXQ9BXM0 1461 aa20.39■□□□□ 0.85
ERGIC3-211ENST00000461043 RAPGEF2Q9Y4G8 1499 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms