RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 NISCHQ9Y2I1 1504 aa28.91■■■□□ 2.22
VPS4A-204ENST00000566354 CCDC180Q9P1Z9 1646 aa25.25■■□□□ 1.63
VPS4A-204ENST00000566354 ZCCHC6Q5VYS8 1495 aaKnown RBP24.24■■□□□ 1.47
VPS4A-204ENST00000566354 ABCC9O60706 1549 aa24.14■■□□□ 1.45
VPS4A-204ENST00000566354 DCAF8L2P0C7V8 631 aa24.02■■□□□ 1.44
VPS4A-204ENST00000566354 DCAF1Q9Y4B6 1507 aa23.85■■□□□ 1.41
VPS4A-204ENST00000566354 MYO15BQ96JP2 1530 aa23.63■■□□□ 1.37
VPS4A-204ENST00000566354 NACADO15069 1562 aa23.57■■□□□ 1.36
VPS4A-204ENST00000566354 SHROOM4Q9ULL8 1493 aa23.54■■□□□ 1.36
VPS4A-204ENST00000566354 RB1CC1Q8TDY2 1594 aa23.42■■□□□ 1.34
VPS4A-204ENST00000566354 SCRIBQ14160 1630 aa23.28■■□□□ 1.32
VPS4A-204ENST00000566354 UNC13AQ9UPW8 1703 aa23.01■■□□□ 1.27
VPS4A-204ENST00000566354 BICRAQ9NZM4 1560 aa22.77■■□□□ 1.24
VPS4A-204ENST00000566354 PABPN1Q86U42 306 aaKnown RBP eCLIP22.76■■□□□ 1.23
VPS4A-204ENST00000566354 SUPT5HO00267 1087 aaKnown RBP22.54■■□□□ 1.2
VPS4A-204ENST00000566354 CECR2Q9BXF3 1484 aa22.53■■□□□ 1.2
VPS4A-204ENST00000566354 RSF1Q96T23 1441 aaPredicted RBP22.37■■□□□ 1.17
VPS4A-204ENST00000566354 MROH2BQ7Z745 1585 aa22.36■■□□□ 1.17
VPS4A-204ENST00000566354 BAZ1AQ9NRL2 1556 aaPredicted RBP22.32■■□□□ 1.16
VPS4A-204ENST00000566354 SMARCA4P51532 1647 aa22.27■■□□□ 1.16
VPS4A-204ENST00000566354 WIZO95785 1651 aa22.18■■□□□ 1.14
VPS4A-204ENST00000566354 EIF4G1Q04637 1599 aaKnown RBP22.09■■□□□ 1.13
VPS4A-204ENST00000566354 CHIC1Q5VXU3 224 aa22.05■■□□□ 1.12
VPS4A-204ENST00000566354 PEG3Q9GZU2 1588 aa21.97■■□□□ 1.11
VPS4A-204ENST00000566354 ATAD2BQ9ULI0 1458 aa21.95■■□□□ 1.1
VPS4A-204ENST00000566354 SMARCA2P51531 1590 aa21.9■■□□□ 1.1
VPS4A-204ENST00000566354 TOP2AP11388 1531 aaKnown RBP21.89■■□□□ 1.1
VPS4A-204ENST00000566354 CC2D2AQ9P2K1 1620 aa21.82■■□□□ 1.08
VPS4A-204ENST00000566354 BAZ1BQ9UIG0 1483 aaKnown RBP21.81■■□□□ 1.08
VPS4A-204ENST00000566354 NCAPD3P42695 1498 aa21.77■■□□□ 1.08
VPS4A-204ENST00000566354 HRCP23327 699 aa21.74■■□□□ 1.07
VPS4A-204ENST00000566354 HMGXB3Q12766 1538 aa21.71■■□□□ 1.07
VPS4A-204ENST00000566354 CCDC88BA6NC98 1476 aa21.7■■□□□ 1.06
VPS4A-204ENST00000566354 PELP1Q8IZL8 1130 aaKnown RBP21.55■■□□□ 1.04
VPS4A-204ENST00000566354 PCGF6Q9BYE7 350 aa21.54■■□□□ 1.04
VPS4A-204ENST00000566354 DNAJC5BQ9UF47 199 aa21.51■■□□□ 1.03
VPS4A-204ENST00000566354 LOC105371045A0A1W2PR82 267 aa21.34■■□□□ 1.01
VPS4A-204ENST00000566354 MYT1Q01538 1121 aa21.34■■□□□ 1.01
VPS4A-204ENST00000566354 CFTRP13569 1480 aa21.25■□□□□ 0.99
VPS4A-204ENST00000566354 ABCC8Q09428 1581 aa21.22■□□□□ 0.99
VPS4A-204ENST00000566354 CADPSQ9ULU8 1353 aa21.21■□□□□ 0.99
VPS4A-204ENST00000566354 TRIM26Q12899 539 aaPredicted RBP21.16■□□□□ 0.98
VPS4A-204ENST00000566354 TRIM41Q8WV44 630 aa21.16■□□□□ 0.98
VPS4A-204ENST00000566354 NESP48681 1621 aa21.15■□□□□ 0.98
VPS4A-204ENST00000566354 PPARGC1BQ86YN6 1023 aaKnown RBP21.13■□□□□ 0.97
VPS4A-204ENST00000566354 PRDM2Q13029 1718 aa21.11■□□□□ 0.97
VPS4A-204ENST00000566354 LAMC3Q9Y6N6 1575 aa21.06■□□□□ 0.96
VPS4A-204ENST00000566354 WRNQ14191 1432 aaPredicted RBP eCLIP21.05■□□□□ 0.96
VPS4A-204ENST00000566354 SYNJ1O43426 1573 aa21■□□□□ 0.95
VPS4A-204ENST00000566354 FANCD2Q9BXW9 1451 aa20.99■□□□□ 0.95
VPS4A-204ENST00000566354 CUX1P39880 1505 aa20.91■□□□□ 0.94
VPS4A-204ENST00000566354 PDS5BQ9NTI5 1447 aa20.9■□□□□ 0.94
VPS4A-204ENST00000566354 TOP2BQ02880 1626 aa20.89■□□□□ 0.94
VPS4A-204ENST00000566354 KIF21AQ7Z4S6 1674 aa20.87■□□□□ 0.93
VPS4A-204ENST00000566354 BIVM-ERCC5R4GMW8 1640 aa20.87■□□□□ 0.93
VPS4A-204ENST00000566354 CEP164Q9UPV0 1460 aa20.87■□□□□ 0.93
VPS4A-204ENST00000566354 ZEB1P37275 1124 aaPredicted RBP20.85■□□□□ 0.93
VPS4A-204ENST00000566354 FAM9AQ8IZU1 332 aaPredicted RBP20.84■□□□□ 0.93
VPS4A-204ENST00000566354 SOGA1O94964 1423 aa20.77■□□□□ 0.92
VPS4A-204ENST00000566354 URB2Q14146 1524 aaKnown RBP20.76■□□□□ 0.91
VPS4A-204ENST00000566354 DNMBPQ6XZF7 1577 aa20.75■□□□□ 0.91
VPS4A-204ENST00000566354 TOPBP1Q92547 1522 aa20.75■□□□□ 0.91
VPS4A-204ENST00000566354 RUSC2Q8N2Y8 1516 aa20.72■□□□□ 0.91
VPS4A-204ENST00000566354 FGD5Q6ZNL6 1462 aa20.71■□□□□ 0.91
VPS4A-204ENST00000566354 ERCC6Q03468 1493 aa20.69■□□□□ 0.9
VPS4A-204ENST00000566354 MRC2Q9UBG0 1479 aa20.65■□□□□ 0.9
VPS4A-204ENST00000566354 POLA1P09884 1462 aaPredicted RBP20.64■□□□□ 0.89
VPS4A-204ENST00000566354 RAD54L2Q9Y4B4 1467 aa20.6■□□□□ 0.89
VPS4A-204ENST00000566354 EEA1Q15075 1411 aa20.59■□□□□ 0.89
VPS4A-204ENST00000566354 EHMT2Q96KQ7 1210 aa20.59■□□□□ 0.89
VPS4A-204ENST00000566354 TTBK1Q5TCY1 1321 aaPredicted RBP20.59■□□□□ 0.89
VPS4A-204ENST00000566354 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
VPS4A-204ENST00000566354 THOC2Q8NI27 1593 aaKnown RBP20.55■□□□□ 0.88
VPS4A-204ENST00000566354 WDR62O43379 1518 aa20.55■□□□□ 0.88
VPS4A-204ENST00000566354 CUX2O14529 1486 aa20.54■□□□□ 0.88
VPS4A-204ENST00000566354 KIF27Q86VH2 1401 aa20.52■□□□□ 0.88
VPS4A-204ENST00000566354 ABCA10Q8WWZ4 1543 aa20.49■□□□□ 0.87
VPS4A-204ENST00000566354 WDR97A6NE52 1622 aa20.46■□□□□ 0.87
VPS4A-204ENST00000566354 TARBP1Q13395 1621 aaKnown RBP20.45■□□□□ 0.86
VPS4A-204ENST00000566354 TDRD9Q8NDG6 1382 aaKnown RBP20.42■□□□□ 0.86
VPS4A-204ENST00000566354 IGF1RP08069 1367 aa20.38■□□□□ 0.85
VPS4A-204ENST00000566354 KIF21BO75037 1637 aa20.37■□□□□ 0.85
VPS4A-204ENST00000566354 IFT140Q96RY7 1462 aa20.36■□□□□ 0.85
VPS4A-204ENST00000566354 ABCA5Q8WWZ7 1642 aa20.36■□□□□ 0.85
VPS4A-204ENST00000566354 RAPGEF2Q9Y4G8 1499 aa20.35■□□□□ 0.85
VPS4A-204ENST00000566354 GOLGA3Q08378 1498 aa20.35■□□□□ 0.85
VPS4A-204ENST00000566354 PRXQ9BXM0 1461 aa20.35■□□□□ 0.85
VPS4A-204ENST00000566354 GAPVD1Q14C86 1478 aa20.33■□□□□ 0.84
VPS4A-204ENST00000566354 ZNF608Q9ULD9 1512 aaPredicted RBP20.32■□□□□ 0.84
VPS4A-204ENST00000566354 AQRO60306 1485 aaKnown RBP eCLIP20.31■□□□□ 0.841e-8■■■■■ 62.3
VPS4A-204ENST00000566354 UBTFP17480 764 aaKnown RBP20.31■□□□□ 0.84
VPS4A-204ENST00000566354 CARMIL1Q5VZK9 1371 aa20.27■□□□□ 0.84
VPS4A-204ENST00000566354 ERICH3Q5RHP9 1530 aa20.26■□□□□ 0.83
VPS4A-204ENST00000566354 TNIKQ9UKE5 1360 aa20.24■□□□□ 0.83
VPS4A-204ENST00000566354 PBRM1Q86U86 1689 aa20.23■□□□□ 0.83
VPS4A-204ENST00000566354 EIF4G3O43432 1585 aaKnown RBP20.23■□□□□ 0.83
VPS4A-204ENST00000566354 CUL7Q14999 1698 aa20.2■□□□□ 0.82
VPS4A-204ENST00000566354 CCER1Q8TC90 406 aaPredicted RBP20.19■□□□□ 0.82
VPS4A-204ENST00000566354 GRIN2BQ13224 1484 aa20.18■□□□□ 0.82
VPS4A-204ENST00000566354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms