RNA–Protein interactions for RNA: ENST00000558428.5

SMAD3-205, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-205ENST00000558428 NISCHQ9Y2I1 1504 aa29.85■■■□□ 2.37
SMAD3-205ENST00000558428 CCDC180Q9P1Z9 1646 aa26.52■■□□□ 1.84
SMAD3-205ENST00000558428 ABCC9O60706 1549 aa25.88■■□□□ 1.73
SMAD3-205ENST00000558428 DCAF8L2P0C7V8 631 aa24.95■■□□□ 1.58
SMAD3-205ENST00000558428 RB1CC1Q8TDY2 1594 aa24.93■■□□□ 1.58
SMAD3-205ENST00000558428 NACADO15069 1562 aa24.9■■□□□ 1.58
SMAD3-205ENST00000558428 ZCCHC6Q5VYS8 1495 aaKnown RBP24.88■■□□□ 1.57
SMAD3-205ENST00000558428 MYO15BQ96JP2 1530 aa24.76■■□□□ 1.55
SMAD3-205ENST00000558428 DCAF1Q9Y4B6 1507 aa24.68■■□□□ 1.54
SMAD3-205ENST00000558428 UNC13AQ9UPW8 1703 aa24.4■■□□□ 1.5
SMAD3-205ENST00000558428 SCRIBQ14160 1630 aa24.23■■□□□ 1.47
SMAD3-205ENST00000558428 PABPN1Q86U42 306 aaKnown RBP eCLIP24.2■■□□□ 1.46
SMAD3-205ENST00000558428 BICRAQ9NZM4 1560 aa24.15■■□□□ 1.46
SMAD3-205ENST00000558428 SHROOM4Q9ULL8 1493 aa23.89■■□□□ 1.42
SMAD3-205ENST00000558428 DNAJC5BQ9UF47 199 aa23.67■■□□□ 1.38
SMAD3-205ENST00000558428 EIF4G1Q04637 1599 aaKnown RBP23.52■■□□□ 1.36
SMAD3-205ENST00000558428 CC2D2AQ9P2K1 1620 aa23.42■■□□□ 1.34
SMAD3-205ENST00000558428 CECR2Q9BXF3 1484 aa23.25■■□□□ 1.31
SMAD3-205ENST00000558428 SMARCA4P51532 1647 aa23.16■■□□□ 1.3
SMAD3-205ENST00000558428 BAZ1AQ9NRL2 1556 aaPredicted RBP23.14■■□□□ 1.29
SMAD3-205ENST00000558428 MROH2BQ7Z745 1585 aa23.01■■□□□ 1.27
SMAD3-205ENST00000558428 ATAD2BQ9ULI0 1458 aa23■■□□□ 1.27
SMAD3-205ENST00000558428 SMARCA2P51531 1590 aa22.98■■□□□ 1.27
SMAD3-205ENST00000558428 NCAPD3P42695 1498 aa22.96■■□□□ 1.27
SMAD3-205ENST00000558428 PEG3Q9GZU2 1588 aa22.91■■□□□ 1.26
SMAD3-205ENST00000558428 HMGXB3Q12766 1538 aa22.87■■□□□ 1.25
SMAD3-205ENST00000558428 BAZ1BQ9UIG0 1483 aaKnown RBP22.83■■□□□ 1.25
SMAD3-205ENST00000558428 WIZO95785 1651 aa22.79■■□□□ 1.24
SMAD3-205ENST00000558428 RSF1Q96T23 1441 aaPredicted RBP22.76■■□□□ 1.23
SMAD3-205ENST00000558428 TOP2AP11388 1531 aaKnown RBP22.53■■□□□ 1.2
SMAD3-205ENST00000558428 NESP48681 1621 aa22.42■■□□□ 1.18
SMAD3-205ENST00000558428 LAMC3Q9Y6N6 1575 aa22.37■■□□□ 1.17
SMAD3-205ENST00000558428 ERCC6Q03468 1493 aa22.32■■□□□ 1.16
SMAD3-205ENST00000558428 CADPSQ9ULU8 1353 aa22.31■■□□□ 1.16
SMAD3-205ENST00000558428 SUPT5HO00267 1087 aaKnown RBP22.29■■□□□ 1.16
SMAD3-205ENST00000558428 CCDC88BA6NC98 1476 aa22.27■■□□□ 1.16
SMAD3-205ENST00000558428 PDS5BQ9NTI5 1447 aa22.22■■□□□ 1.15
SMAD3-205ENST00000558428 CFTRP13569 1480 aa22.19■■□□□ 1.14
SMAD3-205ENST00000558428 KIF21AQ7Z4S6 1674 aa22.17■■□□□ 1.14
SMAD3-205ENST00000558428 PRDM2Q13029 1718 aa22.09■■□□□ 1.13
SMAD3-205ENST00000558428 FANCD2Q9BXW9 1451 aa22.07■■□□□ 1.12
SMAD3-205ENST00000558428 THOC2Q8NI27 1593 aaKnown RBP22.06■■□□□ 1.12
SMAD3-205ENST00000558428 CEP164Q9UPV0 1460 aa22.03■■□□□ 1.12
SMAD3-205ENST00000558428 CUX2O14529 1486 aa22.03■■□□□ 1.12
SMAD3-205ENST00000558428 MRC2Q9UBG0 1479 aa21.98■■□□□ 1.11
SMAD3-205ENST00000558428 WDR62O43379 1518 aa21.9■■□□□ 1.1
SMAD3-205ENST00000558428 URB2Q14146 1524 aaKnown RBP21.84■■□□□ 1.09
SMAD3-205ENST00000558428 TOPBP1Q92547 1522 aa21.73■■□□□ 1.07
SMAD3-205ENST00000558428 ABCC8Q09428 1581 aa21.72■■□□□ 1.07
SMAD3-205ENST00000558428 DNMBPQ6XZF7 1577 aa21.7■■□□□ 1.06
SMAD3-205ENST00000558428 CUX1P39880 1505 aa21.59■■□□□ 1.05
SMAD3-205ENST00000558428 IFT140Q96RY7 1462 aa21.57■■□□□ 1.04
SMAD3-205ENST00000558428 POLA1P09884 1462 aaPredicted RBP21.54■■□□□ 1.04
SMAD3-205ENST00000558428 FGD5Q6ZNL6 1462 aa21.51■■□□□ 1.03
SMAD3-205ENST00000558428 TARBP1Q13395 1621 aaKnown RBP21.47■■□□□ 1.03
SMAD3-205ENST00000558428 WRNQ14191 1432 aaPredicted RBP eCLIP21.47■■□□□ 1.03
SMAD3-205ENST00000558428 ZNF608Q9ULD9 1512 aaPredicted RBP21.46■■□□□ 1.03
SMAD3-205ENST00000558428 SOGA1O94964 1423 aa21.46■■□□□ 1.03
SMAD3-205ENST00000558428 RAD54L2Q9Y4B4 1467 aa21.45■■□□□ 1.03
SMAD3-205ENST00000558428 SYNJ1O43426 1573 aa21.43■■□□□ 1.02
SMAD3-205ENST00000558428 TOP2BQ02880 1626 aa21.42■■□□□ 1.02
SMAD3-205ENST00000558428 BIVM-ERCC5R4GMW8 1640 aa21.42■■□□□ 1.02
SMAD3-205ENST00000558428 EIF4G3O43432 1585 aaKnown RBP21.4■■□□□ 1.02
SMAD3-205ENST00000558428 AQRO60306 1485 aaKnown RBP eCLIP21.36■■□□□ 1.019e-9■■■□□ 16.6
SMAD3-205ENST00000558428 TDRD9Q8NDG6 1382 aaKnown RBP21.33■■□□□ 1
SMAD3-205ENST00000558428 WDR97A6NE52 1622 aa21.33■■□□□ 1
SMAD3-205ENST00000558428 ABCA10Q8WWZ4 1543 aa21.29■■□□□ 1
SMAD3-205ENST00000558428 DNAJC5Q9H3Z4 198 aa21.26■□□□□ 0.99
SMAD3-205ENST00000558428 GAPVD1Q14C86 1478 aa21.21■□□□□ 0.99
SMAD3-205ENST00000558428 ABCA5Q8WWZ7 1642 aa21.21■□□□□ 0.99
SMAD3-205ENST00000558428 GRIN2BQ13224 1484 aa21.2■□□□□ 0.98
SMAD3-205ENST00000558428 PBRM1Q86U86 1689 aa21.19■□□□□ 0.98
SMAD3-205ENST00000558428 SNAPC4Q5SXM2 1469 aa21.17■□□□□ 0.98
SMAD3-205ENST00000558428 OSCARQ8IYS5 282 aa21.14■□□□□ 0.97
SMAD3-205ENST00000558428 MAGI1Q96QZ7 1491 aaPredicted RBP21.13■□□□□ 0.97
SMAD3-205ENST00000558428 CHD1O14646 1710 aa21.13■□□□□ 0.97
SMAD3-205ENST00000558428 FBLN2P98095 1184 aa21.11■□□□□ 0.97
SMAD3-205ENST00000558428 CHMP7Q8WUX9 453 aaPredicted RBP21.05■□□□□ 0.96
SMAD3-205ENST00000558428 SYNJ2O15056 1496 aa21.05■□□□□ 0.96
SMAD3-205ENST00000558428 ERICH3Q5RHP9 1530 aa21.04■□□□□ 0.96
SMAD3-205ENST00000558428 TRIM41Q8WV44 630 aa21.03■□□□□ 0.96
SMAD3-205ENST00000558428 KIF27Q86VH2 1401 aa21.02■□□□□ 0.96
SMAD3-205ENST00000558428 ADAMTS12P58397 1594 aa21.01■□□□□ 0.95
SMAD3-205ENST00000558428 FHAD1B1AJZ9 1412 aa20.96■□□□□ 0.95
SMAD3-205ENST00000558428 GRIN2AQ12879 1464 aa20.93■□□□□ 0.94
SMAD3-205ENST00000558428 IGF1RP08069 1367 aa20.91■□□□□ 0.94
SMAD3-205ENST00000558428 CUL7Q14999 1698 aa20.89■□□□□ 0.93
SMAD3-205ENST00000558428 CLASP1Q7Z460 1538 aa20.87■□□□□ 0.93
SMAD3-205ENST00000558428 RUSC2Q8N2Y8 1516 aa20.86■□□□□ 0.93
SMAD3-205ENST00000558428 CEP170Q5SW79 1584 aa20.82■□□□□ 0.92
SMAD3-205ENST00000558428 NUP160Q12769 1436 aa20.82■□□□□ 0.92
SMAD3-205ENST00000558428 CHIC1Q5VXU3 224 aa20.82■□□□□ 0.92
SMAD3-205ENST00000558428 RIMBP3CA6NJZ7 1639 aa20.81■□□□□ 0.92
SMAD3-205ENST00000558428 RIMBP3BA6NNM3 1639 aa20.81■□□□□ 0.92
SMAD3-205ENST00000558428 CARMIL1Q5VZK9 1371 aa20.81■□□□□ 0.92
SMAD3-205ENST00000558428 RIMBP3Q9UFD9 1639 aa20.81■□□□□ 0.92
SMAD3-205ENST00000558428 ARHGEF11O15085 1522 aa20.8■□□□□ 0.92
SMAD3-205ENST00000558428 RAPGEF2Q9Y4G8 1499 aa20.69■□□□□ 0.9
SMAD3-205ENST00000558428 EEA1Q15075 1411 aa20.66■□□□□ 0.9
SMAD3-205ENST00000558428 SHROOM2Q13796 1616 aa20.66■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms