RNA–Protein interactions for RNA: ENST00000498007.1

HLA-B-255, Transcript of major histocompatibility complex, class I, B, humanhuman

Gene HLA-B, Length 1,087 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-B-255ENST00000498007 NISCHQ9Y2I1 1504 aa47.75■■■■■ 5.23
HLA-B-255ENST00000498007 CCDC180Q9P1Z9 1646 aa42.42■■■■■ 4.38
HLA-B-255ENST00000498007 ABCC9O60706 1549 aa41.3■■■■■ 4.2
HLA-B-255ENST00000498007 ZCCHC6Q5VYS8 1495 aaKnown RBP39.84■■■■□ 3.97
HLA-B-255ENST00000498007 DCAF8L2P0C7V8 631 aa39.82■■■■□ 3.97
HLA-B-255ENST00000498007 RB1CC1Q8TDY2 1594 aa39.8■■■■□ 3.96
HLA-B-255ENST00000498007 NACADO15069 1562 aa39.77■■■■□ 3.96
HLA-B-255ENST00000498007 MYO15BQ96JP2 1530 aa39.54■■■■□ 3.92
HLA-B-255ENST00000498007 DCAF1Q9Y4B6 1507 aa39.47■■■■□ 3.91
HLA-B-255ENST00000498007 UNC13AQ9UPW8 1703 aa38.98■■■■□ 3.83
HLA-B-255ENST00000498007 SCRIBQ14160 1630 aa38.78■■■■□ 3.8
HLA-B-255ENST00000498007 PABPN1Q86U42 306 aaKnown RBP eCLIP38.59■■■■□ 3.77
HLA-B-255ENST00000498007 BICRAQ9NZM4 1560 aa38.58■■■■□ 3.77
HLA-B-255ENST00000498007 SHROOM4Q9ULL8 1493 aa38.15■■■■□ 3.7
HLA-B-255ENST00000498007 DNAJC5BQ9UF47 199 aa37.61■■■■□ 3.61
HLA-B-255ENST00000498007 EIF4G1Q04637 1599 aaKnown RBP37.56■■■■□ 3.6
HLA-B-255ENST00000498007 CC2D2AQ9P2K1 1620 aa37.37■■■■□ 3.57
HLA-B-255ENST00000498007 CECR2Q9BXF3 1484 aa37.19■■■■□ 3.54
HLA-B-255ENST00000498007 SMARCA4P51532 1647 aa37.06■■■■□ 3.52
HLA-B-255ENST00000498007 BAZ1AQ9NRL2 1556 aaPredicted RBP37.02■■■■□ 3.52
HLA-B-255ENST00000498007 MROH2BQ7Z745 1585 aa36.83■■■■□ 3.49
HLA-B-255ENST00000498007 ATAD2BQ9ULI0 1458 aa36.75■■■■□ 3.47
HLA-B-255ENST00000498007 SMARCA2P51531 1590 aa36.73■■■■□ 3.47
HLA-B-255ENST00000498007 NCAPD3P42695 1498 aa36.64■■■■□ 3.46
HLA-B-255ENST00000498007 PEG3Q9GZU2 1588 aa36.63■■■■□ 3.45
HLA-B-255ENST00000498007 HMGXB3Q12766 1538 aa36.55■■■■□ 3.44
HLA-B-255ENST00000498007 BAZ1BQ9UIG0 1483 aaKnown RBP36.5■■■■□ 3.43
HLA-B-255ENST00000498007 WIZO95785 1651 aa36.49■■■■□ 3.43
HLA-B-255ENST00000498007 RSF1Q96T23 1441 aaPredicted RBP36.44■■■■□ 3.42
HLA-B-255ENST00000498007 TOP2AP11388 1531 aaKnown RBP36.08■■■■□ 3.37
HLA-B-255ENST00000498007 NESP48681 1621 aa35.8■■■■□ 3.32
HLA-B-255ENST00000498007 SUPT5HO00267 1087 aaKnown RBP35.72■■■■□ 3.31
HLA-B-255ENST00000498007 LAMC3Q9Y6N6 1575 aa35.72■■■■□ 3.31
HLA-B-255ENST00000498007 CCDC88BA6NC98 1476 aa35.62■■■■□ 3.29
HLA-B-255ENST00000498007 CADPSQ9ULU8 1353 aa35.6■■■■□ 3.29
HLA-B-255ENST00000498007 ERCC6Q03468 1493 aa35.6■■■■□ 3.29
HLA-B-255ENST00000498007 CFTRP13569 1480 aa35.45■■■■□ 3.27
HLA-B-255ENST00000498007 KIF21AQ7Z4S6 1674 aa35.45■■■■□ 3.27
HLA-B-255ENST00000498007 PDS5BQ9NTI5 1447 aa35.43■■■■□ 3.26
HLA-B-255ENST00000498007 PRDM2Q13029 1718 aa35.33■■■■□ 3.25
HLA-B-255ENST00000498007 FANCD2Q9BXW9 1451 aa35.26■■■■□ 3.23
HLA-B-255ENST00000498007 THOC2Q8NI27 1593 aaKnown RBP35.24■■■■□ 3.23
HLA-B-255ENST00000498007 CEP164Q9UPV0 1460 aa35.22■■■■□ 3.23
HLA-B-255ENST00000498007 MRC2Q9UBG0 1479 aa35.1■■■■□ 3.21
HLA-B-255ENST00000498007 CUX2O14529 1486 aa35.08■■■■□ 3.21
HLA-B-255ENST00000498007 WDR62O43379 1518 aa34.99■■■■□ 3.19
HLA-B-255ENST00000498007 URB2Q14146 1524 aaKnown RBP34.9■■■■□ 3.18
HLA-B-255ENST00000498007 TOPBP1Q92547 1522 aa34.71■■■■□ 3.15
HLA-B-255ENST00000498007 DNMBPQ6XZF7 1577 aa34.71■■■■□ 3.15
HLA-B-255ENST00000498007 ABCC8Q09428 1581 aa34.67■■■■□ 3.14
HLA-B-255ENST00000498007 CUX1P39880 1505 aa34.55■■■■□ 3.12
HLA-B-255ENST00000498007 POLA1P09884 1462 aaPredicted RBP34.44■■■■□ 3.1
HLA-B-255ENST00000498007 IFT140Q96RY7 1462 aa34.43■■■■□ 3.1
HLA-B-255ENST00000498007 FGD5Q6ZNL6 1462 aa34.4■■■■□ 3.1
HLA-B-255ENST00000498007 WRNQ14191 1432 aaPredicted RBP eCLIP34.38■■■■□ 3.09
HLA-B-255ENST00000498007 SYNJ1O43426 1573 aa34.35■■■■□ 3.09
HLA-B-255ENST00000498007 TARBP1Q13395 1621 aaKnown RBP34.33■■■■□ 3.09
HLA-B-255ENST00000498007 BIVM-ERCC5R4GMW8 1640 aa34.33■■■■□ 3.09
HLA-B-255ENST00000498007 TOP2BQ02880 1626 aa34.31■■■■□ 3.08
HLA-B-255ENST00000498007 RAD54L2Q9Y4B4 1467 aa34.29■■■■□ 3.08
HLA-B-255ENST00000498007 ZNF608Q9ULD9 1512 aaPredicted RBP34.29■■■■□ 3.08
HLA-B-255ENST00000498007 SOGA1O94964 1423 aa34.26■■■■□ 3.07
HLA-B-255ENST00000498007 EIF4G3O43432 1585 aaKnown RBP34.22■■■■□ 3.07
HLA-B-255ENST00000498007 WDR97A6NE52 1622 aa34.15■■■■□ 3.06
HLA-B-255ENST00000498007 AQRO60306 1485 aaKnown RBP eCLIP34.09■■■■□ 3.05
HLA-B-255ENST00000498007 TDRD9Q8NDG6 1382 aaKnown RBP34.06■■■■□ 3.04
HLA-B-255ENST00000498007 ABCA10Q8WWZ4 1543 aa34.04■■■■□ 3.04
HLA-B-255ENST00000498007 ABCA5Q8WWZ7 1642 aa33.95■■■■□ 3.03
HLA-B-255ENST00000498007 PBRM1Q86U86 1689 aa33.92■■■■□ 3.02
HLA-B-255ENST00000498007 GAPVD1Q14C86 1478 aa33.89■■■■□ 3.02
HLA-B-255ENST00000498007 GRIN2BQ13224 1484 aa33.86■■■■□ 3.01
HLA-B-255ENST00000498007 SNAPC4Q5SXM2 1469 aa33.83■■■■□ 3.01
HLA-B-255ENST00000498007 CHD1O14646 1710 aa33.76■■■■□ 3
HLA-B-255ENST00000498007 MAGI1Q96QZ7 1491 aaPredicted RBP33.75■■■□□ 2.99
HLA-B-255ENST00000498007 TRIM41Q8WV44 630 aa33.69■■■□□ 2.98
HLA-B-255ENST00000498007 DNAJC5Q9H3Z4 198 aa33.68■■■□□ 2.98
HLA-B-255ENST00000498007 FBLN2P98095 1184 aa33.66■■■□□ 2.98
HLA-B-255ENST00000498007 ERICH3Q5RHP9 1530 aa33.64■■■□□ 2.98
HLA-B-255ENST00000498007 KIF27Q86VH2 1401 aa33.63■■■□□ 2.97
HLA-B-255ENST00000498007 ADAMTS12P58397 1594 aa33.63■■■□□ 2.97
HLA-B-255ENST00000498007 SYNJ2O15056 1496 aa33.62■■■□□ 2.97
HLA-B-255ENST00000498007 OSCARQ8IYS5 282 aa33.61■■■□□ 2.97
HLA-B-255ENST00000498007 CHMP7Q8WUX9 453 aaPredicted RBP33.56■■■□□ 2.96
HLA-B-255ENST00000498007 FHAD1B1AJZ9 1412 aa33.49■■■□□ 2.95
HLA-B-255ENST00000498007 GRIN2AQ12879 1464 aa33.44■■■□□ 2.94
HLA-B-255ENST00000498007 CUL7Q14999 1698 aa33.44■■■□□ 2.94
HLA-B-255ENST00000498007 IGF1RP08069 1367 aa33.42■■■□□ 2.94
HLA-B-255ENST00000498007 RUSC2Q8N2Y8 1516 aa33.42■■■□□ 2.94
HLA-B-255ENST00000498007 CHIC1Q5VXU3 224 aa33.39■■■□□ 2.94
HLA-B-255ENST00000498007 CLASP1Q7Z460 1538 aa33.33■■■□□ 2.93
HLA-B-255ENST00000498007 CEP170Q5SW79 1584 aa33.3■■■□□ 2.92
HLA-B-255ENST00000498007 CARMIL1Q5VZK9 1371 aa33.25■■■□□ 2.91
HLA-B-255ENST00000498007 NUP160Q12769 1436 aa33.25■■■□□ 2.91
HLA-B-255ENST00000498007 RIMBP3CA6NJZ7 1639 aa33.17■■■□□ 2.9
HLA-B-255ENST00000498007 RIMBP3BA6NNM3 1639 aa33.17■■■□□ 2.9
HLA-B-255ENST00000498007 RIMBP3Q9UFD9 1639 aa33.17■■■□□ 2.9
HLA-B-255ENST00000498007 ARHGEF11O15085 1522 aa33.16■■■□□ 2.9
HLA-B-255ENST00000498007 RAPGEF2Q9Y4G8 1499 aa33.11■■■□□ 2.89
HLA-B-255ENST00000498007 EEA1Q15075 1411 aa33.11■■■□□ 2.89
HLA-B-255ENST00000498007 FAM9AQ8IZU1 332 aaPredicted RBP33.05■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms